Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 598 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 594 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 409 / 6e-137 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 409 / 7e-137 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 404 / 3e-135 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 402 / 2e-134 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 402 / 7e-134 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 363 / 3e-119 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 754 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 725 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 409 / 7e-137 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 407 / 1e-136 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 381 / 8e-126 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 379 / 3e-125 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 279 / 6e-88 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 67 / 4e-13 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030456 [exp] 672 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 671 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 650 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 644 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 640 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 632 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 632 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 623 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 617 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 613 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.010G168200.2 pacid=42797493 polypeptide=Potri.010G168200.2.p locus=Potri.010G168200 ID=Potri.010G168200.2.v4.1 annot-version=v4.1 ATGGAGTGGGAAATCAAAATACCAGAGATGGAGCTTCTATCAATTATTCATGGCCATGGGCTTCTAGCAGCTTTTATTTTTCTACTGGTCAACTTGTCTC CGTCTTCTTCTTTGCCTCAAGGATACGGGCTCCCTTACATGACTTCAAACGTCAAAGAGGTATTAGGAAAGTCCTTTGATTATATAATCGTGGGGGGAGG CACCGCCGGTTGCCCCCTAGCTGCAACTCTTTCAGAAAAATTTTCTGTGCTTCTGATAGAACGAGGAGGCTCACCGTATGAAAATCCTATGTTGTTGGAT AAGAAGTACTTTGGCTTCCCATTTCTCCAAACTGACGAATTTTCATCTGTGGCTCAAAGATTTATCTCCAGAGATGGAGTTCCAAACCTAAGAGGACGAG TCCTTGGAGGAACATCAACCATAAATGCTGGTTTCTATAGCAGAGCCAGTGCTGACTTTATTAAAAGAGTAGGGTGGGATGAAAAGCTGGTGAAGGAGGC CTATGAGTGGGCGGAGTCTAAAGTTGTTTTTAAACCTCTGTTAACCAAGTGGAATTCTGCTGTTAAGTCTGGCCTTCTTGAAGCAGGAATTCTACCTTAT AATGGTTTCAGCTGGGATCATATTGCGGGAACAAAAATCGGTGGAACTGTGTTTGATGCAAACAGAAAGAGGCACATCTCAGCTGATCTTCTAGAAAGAG GGAACTCAAGTAATATCGTAGTTCTTCTGAATGCTACTGTGAAGAATATCGTCTTCCGAAGTGATGATAAAGGAAAAAAGAGCATAGTTCGTGGTATCAG GTTCATTAACAGCAACGGCAGCATAAATCAAACTTATGAATCTTACCTTACCCAACCAGAGAATTCGAGTCCACAGGGTGATGTTATTTTGTCGGCAGGA GCGATAGGCAGCCCCCAAATTCTATTGCTAAGCGGCATCGGACCAAAAGGACATCTTGGGAACTTCAGCATCCCACTTTTGCTGGACTTGAAAGGGGTTG GGCAAGATATGCAAGACAATCCTGGAATCACCTTGATCCTAAGGGCCAAACCTGAATATCGGCTACCAGAATCGCCTCAAGTTGTTGGCATAGCAAAAGA CTTCAAATTCGTTGTTGAGGGATTTGTGCTACCAGTAAGCTTCAATGCAACGACACTAATGCGAATTTCAATTAAGTTGGCATTTCCAGAATCCAAAGGG AGGCTCGAATTGAACAACACAGACCCTAGGCAGAACCCTGTGGTGCTGTTCAACTATCTAGCAGAGGAAAAAGACTTGAGAGAATGTGTCCAGATGGTTC AACTGGTTAAGAAAGTAGCAAGGTCCAGGTCCATTGCTCGGTTCCTGGGGGCCAAACCCCTAATTAATGTGACATCCAATCCCAATGAGCTAAGAAACTT CTGCAGGAAGAACGTGAGGACTTATTATCACTTTCACGGTGGTTGTTCTATAGGATCAGTTATCGATAATGATTACAAAGTAATTGGAGTGAAGGGATTG AGAGTAATAGATGGCTCAACTCTCTCCGAATCGCCAGGAACAAACCCCATGGCCACGCTTTTAATGCTAGGGAGGTACCAAGGGATCAAGATTCTCAAGG AAAGGGAGGATGCTTCTGCATTTGGTAACCAACAACACCCGTAA
AA sequence Show only first row Show all	>Potri.010G168200.2 pacid=42797493 polypeptide=Potri.010G168200.2.p locus=Potri.010G168200 ID=Potri.010G168200.2.v4.1 annot-version=v4.1 MEWEIKIPEMELLSIIHGHGLLAAFIFLLVNLSPSSSLPQGYGLPYMTSNVKEVLGKSFDYIIVGGGTAGCPLAATLSEKFSVLLIERGGSPYENPMLLD KKYFGFPFLQTDEFSSVAQRFISRDGVPNLRGRVLGGTSTINAGFYSRASADFIKRVGWDEKLVKEAYEWAESKVVFKPLLTKWNSAVKSGLLEAGILPY NGFSWDHIAGTKIGGTVFDANRKRHISADLLERGNSSNIVVLLNATVKNIVFRSDDKGKKSIVRGIRFINSNGSINQTYESYLTQPENSSPQGDVILSAG AIGSPQILLLSGIGPKGHLGNFSIPLLLDLKGVGQDMQDNPGITLILRAKPEYRLPESPQVVGIAKDFKFVVEGFVLPVSFNATTLMRISIKLAFPESKG RLELNNTDPRQNPVVLFNYLAEEKDLRECVQMVQLVKKVARSRSIARFLGAKPLINVTSNPNELRNFCRKNVRTYYHFHGGCSIGSVIDNDYKVIGVKGL RVIDGSTLSESPGTNPMATLLMLGRYQGIKILKEREDASAFGNQQHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	0	1
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G145700 [exp]	1.41	0.8866	Pt-ARA1.1
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	2.00	0.8549
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	2.82	0.8682
					Potri.001G426260 [exp]	3.87	0.8668
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037700 [exp]	5.47	0.8423
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G138202 [exp]	5.91	0.8437
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.001G005400 [exp]	6.00	0.7965
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077500 [exp]	7.34	0.8264	Pt-VI1.1
AT1G68300			Adenine nucleotide alpha hydro...		Potri.008G121800 [exp]	9.53	0.8412
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G143800 [exp]	9.89	0.8074

Compare expression of checked genes

Potri.010G168200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.