Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) AT1G14200 135 / 5e-40 RING/U-box superfamily protein (.1) AT3G13430 98 / 2e-24 RING/U-box superfamily protein (.1.2.3) AT5G56340 99 / 4e-24 ATCRT1 RING/U-box superfamily protein (.1) AT3G19950 97 / 7e-24 RING/U-box superfamily protein (.1) AT3G46620 90 / 7e-21 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G55530 89 / 9e-21 RING/U-box superfamily protein (.1) AT1G60360 87 / 5e-20 RING/U-box superfamily protein (.1) AT2G03000 87 / 9e-20 RING/U-box superfamily protein (.1) AT5G59550 86 / 1e-19 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087200 [exp] 336 / 2e-118 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 105 / 1e-26 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 101 / 5e-25 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 95 / 1e-24 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 97 / 6e-24 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 95 / 4e-23 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 95 / 9e-23 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 92 / 4e-22 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 92 / 8e-22 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012819 [exp] 190 / 9e-61 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10030464 [exp] 179 / 3e-56 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10037170 [exp] 150 / 1e-45 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10036757 [exp] 150 / 1e-45 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10002637 [exp] 112 / 4e-29 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 112 / 3e-28 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 99 / 5e-24 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 91 / 9e-22 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10022967 [exp] 86 / 5e-20 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10028063 [exp] 85 / 3e-19 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G168300.1 pacid=42798757 polypeptide=Potri.010G168300.1.p locus=Potri.010G168300 ID=Potri.010G168300.1.v4.1 annot-version=v4.1 ATGGCCTCTGAGACTGAATTTCCTGCCGAGTTTTCTTCTATGTTTGAGAGGCTTTTAAGGCATAGGGACCTCTCTTTGTTCTTACCTTTTATTTTAGGGT TCACCTCCACCAACACCACAGAGCAACGTGACCCAGATCAAGAAGCACCACAAACAACAGACCCAAATGAAAGAATCATCCTTATAAACCCTTTCACTCA AGGCATGGTGGTGATTGAAGGAGCCGCAAGTCTTGAATCTTTACTTAGAGACATAGGTAACAAGAAGGGCCAACCACCAGCCTCCAAAGCATCCATAGAG GCCATGCCAAAAGTGGAGATAGGGGAAGATAATAAAGATGGTGAGTGTGCTATCTGTTTAGAGGAGTGGGAGCTTGGTGGCGTAGTAAAGGAGATGCCTT GTAAGCATAGGTTCCACGGTGGTTGTGTAGAGAAGTGGTTAAAGATTCATGGGAATTGCCCTGTTTGTAGGTACAAGATGCCTGTTGACGAGGAGGAACT GGGGAAGAAAAGAGATGAGGGAGATGGAGGGAGAGAGAGGAGAGTTGAAAGAGAGATTTGGGTTAGTTTTGCTTTTAATGGTAGCAGGAGAAATGGGGAT TCAAATGAAAACCCTTCAAATGATTCTTCTACGGAGGATCAAGAGAGATTTTTGTAA
AA sequence Show only first row Show all	>Potri.010G168300.1 pacid=42798757 polypeptide=Potri.010G168300.1.p locus=Potri.010G168300 ID=Potri.010G168300.1.v4.1 annot-version=v4.1 MASETEFPAEFSSMFERLLRHRDLSLFLPFILGFTSTNTTEQRDPDQEAPQTTDPNERIILINPFTQGMVVIEGAASLESLLRDIGNKKGQPPASKASIE AMPKVEIGEDNKDGECAICLEEWELGGVVKEMPCKHRFHGGCVEKWLKIHGNCPVCRYKMPVDEEELGKKRDEGDGGRERRVEREIWVSFAFNGSRRNGD SNENPSNDSSTEDQERFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26800			RING/U-box superfamily protein...		Potri.010G168300 [exp]	0	1
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	2.82	0.9427
					Potri.014G059200 [exp]	6.24	0.8983
					Potri.006G055100 [exp]	6.48	0.8962
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.006G178900 [exp]	7.07	0.9100
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	7.14	0.9174
AT5G05410	AP2_ERF	DREB2A	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.010G183700 [exp]	9.00	0.9353	Pt-DREB2.2
AT5G20620		UBQ4	ubiquitin 4 (.1)		Potri.006G129600 [exp]	11.31	0.9328	SUBI.10
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	11.40	0.8655
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	13.41	0.9154
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Potri.019G102200 [exp]	16.12	0.9098

Compare expression of checked genes

Potri.010G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.