Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09157 224 / 1e-73 Protein of unknown function (DUF679) (.1) AT5G39650 215 / 3e-70 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT3G02430 135 / 4e-39 Protein of unknown function (DUF679) (.1) AT4G24310 133 / 2e-38 Protein of unknown function (DUF679) (.1) AT4G18425 119 / 4e-33 Protein of unknown function (DUF679) (.1) AT5G46090 117 / 3e-32 Protein of unknown function (DUF679) (.1) AT5G27370 106 / 2e-28 Protein of unknown function (DUF679) (.1) AT3G21550 92 / 7e-23 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT4G28485 87 / 2e-21 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1) AT3G21520 85 / 4e-20 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087000 [exp] 403 / 2e-144 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 138 / 2e-40 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 136 / 2e-39 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 135 / 3e-39 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 133 / 2e-38 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 125 / 1e-35 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 105 / 5e-28 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 103 / 3e-27 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 87 / 6e-21 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030466 [exp] 295 / 5e-102 AT1G09157 251 / 3e-84 Protein of unknown function (DUF679) (.1) Lus10012821 [exp] 293 / 5e-101 AT5G39650 246 / 3e-82 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 138 / 4e-40 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 135 / 3e-39 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 135 / 6e-39 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 134 / 9e-39 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 133 / 2e-38 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 124 / 8e-35 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 122 / 5e-34 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 122 / 5e-34 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [poplar] [flax] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Potri.010G168400.1 pacid=42798459 polypeptide=Potri.010G168400.1.p locus=Potri.010G168400 ID=Potri.010G168400.1.v4.1 annot-version=v4.1 ATGGAGCAAACTCCTGGAGAAGAAATTGGAATCAGAATCTACACTGCATCCCCGCAAAATGAACCTAAATTAAACAAAATCTCCACTGGATCCCATCAAG ATGATGAAACAAAACCATCAAAGCCATTATGCACCCTCACCAAAGCCCCTAAAGAACCAGGCAGCAAACGGAGAGCCGTGGCTAAAGGAATGCAAAAAAC AATCTCCAAGACATCCATGCTTGTTAACTTCCTTCCAACAGGCACCCTTTTGACATTTGAAATGCTTCTTCCATCAATATCCAAGAATGGAGTGTGCACA CCTGTTACTGCCCTAATGATCTATGCCCTTCTTGGTCTTTGCTCTCTTTCCTGCTTTTTCTTTCATTTCACCGACAGTTTCAAGGGCCCAGATGACAAAA TTTACTATGGCTTTGTTACTACAAAAGGGTTGGCTGTTTTTAAGCCTGGTCTTACAGTTGACGTGCCTAAAGATGAGAGGTACAGAGTTGGGTTTACCGA TCTTGTTCATGCAGTGATGTCGGTGATGGTATTCATGGCAATTGCGTTGTCAGATCATAGAGTGACCGGATGCTTGTTTCCTGGGCATGTTAAGGAGATG GGTGAAGTGATGGAGAGTTTTCCTCTCATGGTTGGTGTAATTTGCAGTGGCCTGTTCTTAGTGTTCCCTACTAGTCGACATGGCATTGGATGCATGTCTA ATTGA
AA sequence Show only first row Show all	>Potri.010G168400.1 pacid=42798459 polypeptide=Potri.010G168400.1.p locus=Potri.010G168400 ID=Potri.010G168400.1.v4.1 annot-version=v4.1 MEQTPGEEIGIRIYTASPQNEPKLNKISTGSHQDDETKPSKPLCTLTKAPKEPGSKRRAVAKGMQKTISKTSMLVNFLPTGTLLTFEMLLPSISKNGVCT PVTALMIYALLGLCSLSCFFFHFTDSFKGPDDKIYYGFVTTKGLAVFKPGLTVDVPKDERYRVGFTDLVHAVMSVMVFMAIALSDHRVTGCLFPGHVKEM GEVMESFPLMVGVICSGLFLVFPTSRHGIGCMSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09157			Protein of unknown function (D...		Potri.010G168400 [exp]	0	1
AT2G24960			unknown protein		Potri.017G120900 [exp]	3.31	0.7416
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	6.92	0.7299
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.019G033300 [exp]	23.04	0.6965	TBP1.2,GTF902
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	26.64	0.7141
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	27.71	0.7143
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	36.87	0.7019
AT4G02235	MADS	AGL51	AGAMOUS-like 51 (.1)		Potri.015G077800 [exp]	43.26	0.6629
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G113566 [exp]	44.18	0.6282
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Potri.001G342600 [exp]	44.89	0.6401
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	49.14	0.6529

Compare expression of checked genes

Potri.010G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.