Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26810 857 / 0 GALT1 galactosyltransferase1 (.1) AT3G06440 525 / 3e-180 Galactosyltransferase family protein (.1.2) AT1G74800 356 / 3e-114 Galactosyltransferase family protein (.1) AT1G27120 350 / 8e-112 Galactosyltransferase family protein (.1) AT5G62620 349 / 2e-111 Galactosyltransferase family protein (.1.2) AT4G21060 332 / 1e-104 Galactosyltransferase family protein (.1.2) AT3G14960 76 / 2e-14 Galactosyltransferase family protein (.1) AT1G53290 74 / 6e-14 Galactosyltransferase family protein (.1) AT2G26100 74 / 8e-14 Galactosyltransferase family protein (.1) AT1G77810 66 / 2e-11 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086900 [exp] 1182 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 598 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 354 / 3e-113 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 352 / 1e-112 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 342 / 3e-108 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 327 / 1e-102 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 309 / 2e-96 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 72 / 2e-13 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 72 / 3e-13 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036756 [exp] 1016 / 0 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10012822 [exp] 1011 / 0 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 956 / 0 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 902 / 0 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 590 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 505 / 8e-173 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 348 / 9e-111 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 345 / 1e-109 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 341 / 4e-108 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 322 / 1e-100 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00337 [poplar] [flax] Gal-bind_lectin Galactoside-binding lectin CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G168500.7 pacid=42800024 polypeptide=Potri.010G168500.7.p locus=Potri.010G168500 ID=Potri.010G168500.7.v4.1 annot-version=v4.1 ATGAAGAAGTGGTACGGTGGTGTTCTGGTTGCATCCTTGTTCATGTTACTGATCCTTAGATATGGTCTCCTGAAAAATCCAATCGGAGGAAATATTCTGT TGAATCCCTCCTCCAATGCAAGCAAGCCTCTTGAATGGGTGCATCCTGCTGTTCCACCTGCAGTTCAAAATCCAGAGACTTCTTCTCAAGTTTTTTCTAC AGATACCATAGTCTCCAGTCTGTTTGCTCCGAGAAATATTTCCAATGAAGAGCACAAGTCTCTGCAGACATGGAATCTACTGAAACACTTGATTGATCAT GCTCAGGTTTTCGCAAATGGAGTAGAAGCTATTAAGGAAGCTGGAAATGCGTGGAGCAGCCTGATGGCTTCAGCAGAAGAGGAAAGACTTAGTTATACAA ATGAAAGTTCAAGTAGGAAAGTGAAAGAGAAACAATGTCCTCACTTTCTTAACAAAATGAATGCCACAGAGCTTGATAATAGTGGTTATAAATTGTGGCT TCCTTGTGGCTTGACTCAGGGTTCGTCCATCACAATTATCAGCATTCCAGATGGTCTTCTCGGTAATTTTCGGATCGACTTAACCGGGGAAGCACTTCCA GGGGAGCCTGATCCACCCATCATTTTACATTACAATGTTAGGCTTCATGGTGATAAGATTACAGAGGATCCTGTAATTGTCCAAAACACCTGGAATGCGG CTCATGACTGGGGTGAAGAGGAGCGTTGTCCTTCTCCATCTCCCGAAAAGAATAAGAAAGTGGACGAGTTGGATCAATGTAATAAGATGGTGGGCAGAAA CGATACTCGGGTGACTAGCATGCATTCTGATCATTCGAGAAGGTCATCACTTCAGGAAGGAACTAAAGCAAGAAGATATTTTCCATTTAAGCAAGGTCAG CTATCTGTCGCAACGCTTAGAGTGGGAATGGAAGGAATCCAGATGACTGTTGATGGAAAGCACATAACATCCTTTGCATATCGTGAAACTTTGGAGCCAT GGCTAGTTAGTGAAGTTAGGATTTCTGGGGACCTAAATCTAATTTCAGTTGTGGCTAGTGGTCTACCTACATCAGAGGATTCAGAGCATGCAGTTGATCT AGAAGTACTCAAATCAGCTCCTCTCTCTCCAAAAAAAACACTGGATCTCTTTATTGGTGTCTTTTCTACGGCAAACAATTTTAAGCGGAGGATGGCTGTT CGAAGAACATGGATGCAGTATGCTGCAGTGCGATCAGGGGCAGTTGCAGTGCGCTTTTTTGTTGGTCTGCATAAAAATCAAATAGTGAATGAGGAACTCT GGAATGAAGCACGGACATATGGAGACATACAGCTGATGCCTTTTGTTGACTACTATAACCTCATCACCTTTAAAACTTTAGCTATCTGCATATTTGGGAC AGAGGTTGCATCAGCTAAGTATGTCATGAAGACAGATGACGATGCGTTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAAGAGGATCAAAGTGAGTCAT GGGTTGCTCTATGGATTAATCAATTCAGACTCTCGGCCTCATAGGAGTACTGAAAGCAAGTGGTATATTAGCCCTGAGGAATGGTCTGAAGAGACCTATC CCCCCTGGGCACATGGTCCTGGTTACGTTGTGTCTCGTGACATTGCCAAGGCAGTTTACAAGAGATACAAAGAAGGCCGTTTAAAGATGTTTAAGCTAGA GGATGTAGCAATGGGTATCTGGATTGCTGAGATGAAAAAGGAGGGTTTAGAAGTCAAATATGAGATGGAAGGGAGGGTCCATAATGAAGGGTGCAGGGAT GGCTATGTTGTAGCCCACTACCAAGCTCCTAGGGAAATGCTCTGTCTGTGGCAGAAACTTCAAGAAGGGAATGTTGCTAGATGCTGCGGTGATCGATAA
AA sequence Show only first row Show all	>Potri.010G168500.7 pacid=42800024 polypeptide=Potri.010G168500.7.p locus=Potri.010G168500 ID=Potri.010G168500.7.v4.1 annot-version=v4.1 MKKWYGGVLVASLFMLLILRYGLLKNPIGGNILLNPSSNASKPLEWVHPAVPPAVQNPETSSQVFSTDTIVSSLFAPRNISNEEHKSLQTWNLLKHLIDH AQVFANGVEAIKEAGNAWSSLMASAEEERLSYTNESSSRKVKEKQCPHFLNKMNATELDNSGYKLWLPCGLTQGSSITIISIPDGLLGNFRIDLTGEALP GEPDPPIILHYNVRLHGDKITEDPVIVQNTWNAAHDWGEEERCPSPSPEKNKKVDELDQCNKMVGRNDTRVTSMHSDHSRRSSLQEGTKARRYFPFKQGQ LSVATLRVGMEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLNLISVVASGLPTSEDSEHAVDLEVLKSAPLSPKKTLDLFIGVFSTANNFKRRMAV RRTWMQYAAVRSGAVAVRFFVGLHKNQIVNEELWNEARTYGDIQLMPFVDYYNLITFKTLAICIFGTEVASAKYVMKTDDDAFVRVDEVLASLKRIKVSH GLLYGLINSDSRPHRSTESKWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYEMEGRVHNEGCRD GYVVAHYQAPREMLCLWQKLQEGNVARCCGDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.010G168500 [exp]	0	1
AT5G20660			Zn-dependent exopeptidases sup...		Potri.008G039400 [exp]	4.89	0.6698
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	6.70	0.6392
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.005G172200 [exp]	9.59	0.7104	MEKK1.1
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	13.85	0.5986
AT3G59430			unknown protein		Potri.017G029800 [exp]	16.06	0.6722
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	18.43	0.5833
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	28.98	0.6378
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	31.36	0.6195	PtrCSLD1,CESA3.2
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G236300 [exp]	31.84	0.5958
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	42.96	0.5780

Compare expression of checked genes

Potri.010G168500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.