Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02980 860 / 0 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 511 / 1e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 507 / 4e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G29760 488 / 1e-164 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 489 / 2e-164 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 478 / 4e-162 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 474 / 6e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 476 / 2e-160 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 476 / 3e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 473 / 6e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 523 / 4e-180 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G050200 [exp] 522 / 2e-179 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 505 / 5e-175 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G237000 [exp] 508 / 2e-174 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 508 / 1e-172 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 503 / 6e-172 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 491 / 7e-168 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 496 / 8e-168 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 488 / 2e-166 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024971 [exp] 515 / 8e-177 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 511 / 2e-175 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 507 / 3e-174 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 508 / 7e-174 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014298 [exp] 489 / 2e-166 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 488 / 6e-166 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 488 / 8e-165 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 480 / 1e-161 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 478 / 7e-161 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 472 / 8e-159 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.010G168800.1 pacid=42798502 polypeptide=Potri.010G168800.1.p locus=Potri.010G168800 ID=Potri.010G168800.1.v4.1 annot-version=v4.1 ATGAAAATGGCAACTGCACCATTTCCACCAGTGATCCAACAGTCTCCCTCACAACACAGTTCTTATTACAACACCACATACCCATCAAGCCTTCTCTCTT GCTTACCCAAATGCACCTCTCTTAAAGAACTTAAGCAGATTCAAGCCTTTTCGATCAAAACCCACCTCCAAAATGACCTCCAAATCCTCACCAAGCTCAT CAACTCTTGCACCCAAAACCCTACCACCGCCTCCATGGACTACGCACACCAGCTGTTTGAAGCAATTCCCCAGCCAGACATTGTCCTCTTTAACTCCATG TTTCGCGGCTATTCGCGGTCCAATGCCCCTCTCAAAGCCATCTCTCTCTTTATCAAAGCTTTAAATTATAATCTCTTGCCGGATGACTACACTTTCCCAT CTTTACTTAAAGCGTGTGTGGTCGCTAAAGCCTTTCAACAAGGTAAACAACTGCATTGCCTTGCTATCAAACTTGGGCTAAATGAGAATCCTTATGTCTG CCCTACACTTATAAATATGTACGCCGGGTGTAATGATGTGGATGGGGCTCAACGAGTGTTTGATGAGATATTAGAACCGTGTGTTGTTTCATATAATGCT ATTATAACGGGCTATGCTAGAAGTAGCAGGCCTAATGAGGCACTGTCTCTGTTTCGCCAATTGCAAGCTAGGAAACTTAAGCCTAATGACGTTACCGTGC TCAGTGTTCTATCGTCGTGTGCATTGTTGGGTGCATTAGACTTAGGGAAGTGGATCCATGAATATGTTAAGAAGAATGGACTGGATAAATATGTTAAGGT GAATACGGCACTTATAGATATGTACGCCAAATGTGGAAGCTTGGATGGTGCCATTTCTGTCTTCGAGAGCATGAGTGTAAGAGACACGCAGGCTTGGTCT GCGATGATCGTGGCATATGCAATGCATGGGCAGGGTCAAGATGTGATGTCTATGTTCGAAGAAATGGCGAGGGCAAAAGTGCAGCCTGATGAGATTACAT TTTTAGGCCTACTGTATGCTTGTAGTCACACTGGATTGGTGGATGAAGGTTTTCGGTATTTCTATAGTATGAGTGAGGTGTATGGAATTATTCCTGGGAT CAAGCATTACGGGTGTATGGTGGATTTATTAGGTCGAGCTGGACTCTTACATGAAGCTTATAAGTTCATAGATGAGTTGCCGATCAAGCCCACACCTATA CTGTGGCGAACCTTATTATCTTCATGTAGTAGCCATGGCAATCTGGAATTGGCAAAGCAAGTGATGAACCAGATTCTTGAACTTGACGACTCTCATGGCG GGGATTATGTAATTTTATCAAACCTGTGTGCAAGAGCTGGCAAATGGGAGGATGTGGATACTTTAAGAAAATTAATGATCCATAAAGGTGCAGTAAAGAT TCCTGGGTGCAGCTCCATAGAGGTAGATAATGTAGTGCATGAGTTCTTCTCTGGGGATGGTGTGCATTACGTTTCTACAGCTTTACATCGAGCTCTGGAT GAGCTGGTTAAGGAGTTAAAATCAGTCGGATATGTACCAGATACTTCTCTAGTCGTTCATCCTGATATGGAAGATGAAGAGAAAGAAATCACTCTTAGAT ATCATAGTGAAAAACTGGCCATTTCCTTTGGACTCCTCAACACCCCCCCAGGGACAACAATCCGCGTGGTGAAGAATCTTCGAGTTTGCGGGGATTGCCA TTCTGCTGCTAAACTTATATCGTCACTCATTGATAGGGAGATAATTCTTAGAGATGTCCAACGATTTCATCATTTCAAAGACGGGAAATGCTCTTGTGGG GATTACTGGTAG
AA sequence Show only first row Show all	>Potri.010G168800.1 pacid=42798502 polypeptide=Potri.010G168800.1.p locus=Potri.010G168800 ID=Potri.010G168800.1.v4.1 annot-version=v4.1 MKMATAPFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSM FRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNA IITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWS AMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPI LWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALD ELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCG DYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	0	1
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	1.00	0.9875
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	2.82	0.9709
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	3.46	0.9712
AT3G22690			unknown protein		Potri.013G044700 [exp]	3.46	0.9777
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.002G237400 [exp]	4.47	0.9640
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	6.92	0.9701
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	6.92	0.9564
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	8.36	0.9707
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	8.36	0.9693
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	10.58	0.9649

Compare expression of checked genes

Potri.010G168800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.