Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02970 607 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 519 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 513 / 3e-179 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 471 / 8e-163 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT3G04080 139 / 8e-36 ATAPY1 apyrase 1 (.1) AT4G19180 138 / 2e-34 GDA1/CD39 nucleoside phosphatase family protein (.1) AT5G18280 135 / 4e-34 ATAPY2 apyrase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086400 [exp] 863 / 0 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 332 / 7e-108 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031000 [exp] 153 / 9e-41 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053500 [exp] 147 / 1e-38 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031200 [exp] 135 / 2e-34 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.004G236900 [exp] 135 / 3e-33 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 113 / 1e-26 AT5G21140 325 / 2e-108 embryo defective 1379 (.1) Potri.015G079900 [exp] 111 / 7e-26 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.013G053700 [exp] 107 / 1e-25 AT5G18280 300 / 2e-98 apyrase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012825 [exp] 642 / 0 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 637 / 0 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030471 [exp] 439 / 2e-152 AT2G02970 391 / 1e-133 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 139 / 1e-35 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10034777 [exp] 134 / 4e-33 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 132 / 1e-32 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10042528 [exp] 131 / 5e-32 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10037285 [exp] 130 / 9e-32 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10003270 [exp] 123 / 2e-30 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10035695 [exp] 111 / 2e-25 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01150 [poplar] [flax] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Potri.010G169100.1 pacid=42799768 polypeptide=Potri.010G169100.1.p locus=Potri.010G169100 ID=Potri.010G169100.1.v4.1 annot-version=v4.1 ATGCGACGCCTTCATGTCCGCAACCGGGTCGGTTCCAATTCCACCGACCAGACCGACCAGCACAAGATGGATCCTGCAATCAAACTCCATACCCGATCCA TCAAATCCAAACTAATTACTATCATAACCCTAATCGTTCTCTTATCTTGTTATTATCTCTTTAAATCGAAAACGAAATCGTTTTCTAAAAAATACGGTAT CATAATCGACGGAGGGAGTACGGGTACCCGGATTCATGTATTCGGGTACCGAATTGGGAGTGGAGGGAAAGCTGTGTTTGATTTTGAAGAAGGGGCATTG AAGGTGAATCCAGGGTTATCGGCGTATGCGGAGGATCCGGAAGGGGCAGGTGGGTCGGTGGAGGAATTGGTGGAGTTTGGGAAAGGGAGAGTGCCTAGAG AATTGTGGGGAGAGACCGAGGTTAGGTTAATGGCAACTGCCGGAGTGCGGTTGCTTGATTTGGAGGTTCAAGATCAGATCTTGAATGTGTGTAGACGGGT TTTGAGGAAGTCTGGATTTAAGTTTCAGGACAGTTGGGCTTCTGTTATTACTGGGTCGGACGAGGGGTTGTACGCTTGGGTTGTTGCGAATTATGCATTG GGTGCTCTTGGTGGCGATCCTTTGGAAACTAGTGGGATTATTGAACTTGGTGGAGCTTCTGCTCAGGTGACTTTTGTTTCAACAGAGCCAGTGCCTCCTG AGTTCTCACGAACTATTAAGTTCGGTAATATTTCTTACAATATCTATAGCCATAGCTTTCTTCATTTGGGACAGATTGCTGCATTTGAAGCATTGAGGGA ATCACTTGTCTCAGGTGACCATCATTTGGCAGCTGCTGAATCTCTTGAGAAGGGAATATTTAAGGACCCTTGTACTCCCAAGGGATACTCACATGTTGTG GAGTCTTGGAAGCTCTCTCCAGGTTCTTTGACTGAAAAGAACAGATTTGTATCCACTCTTCATTCTAGGGGCAACTTCTCTGAGTGCAGATCAGCTGCCC TAACACTGTTACAAAAGGGAAAAGAGAGATGCTCCTATCAGCATTGCCACATAGGATCAATATTTGTACCTAAGCTTCAGGGGAAGTTCTTGGCCACAGA AAATTTCTTCCATACATCAAAGTTCTTTGGACTGGATCAAAGGGCATTTCTTTTGAATCTCATGATAGCTGGAGAACAGTTTTGTGGAGAGGATTGGTCA AGGTTGAAAAAGAAACACCAATCATTCAAGGATGAAGATCTAGCACTCTATTGTTTCTCTGCAGCATATATCGTTGCCCTACTTCATGACAGCCTTGGAA TTGCAATTGATGACCAAAGAATTGGATTTGCTAATCAGGTTGGTAATATCCCACTTGATTGGGCATCGGGAGCTTTCATCTTGTATACCAATGCTGCCTT GGATATGGAAGAGCACTCTGACTGGATTGTGACTATTATTAGTGATGACCCGCTAACACTACTCTCTCTAATTGGCATAGCCATAGTATTGATATTTGTT GCATGGCCTATATCGAAGTGGGGGAAGCACCAGTTGAAGACATTTTATGATCTAGAGAGGGGGTGGTATATAGTTACTCGAGGTGGAAAAAGTTGA
AA sequence Show only first row Show all	>Potri.010G169100.1 pacid=42799768 polypeptide=Potri.010G169100.1.p locus=Potri.010G169100 ID=Potri.010G169100.1.v4.1 annot-version=v4.1 MRRLHVRNRVGSNSTDQTDQHKMDPAIKLHTRSIKSKLITIITLIVLLSCYYLFKSKTKSFSKKYGIIIDGGSTGTRIHVFGYRIGSGGKAVFDFEEGAL KVNPGLSAYAEDPEGAGGSVEELVEFGKGRVPRELWGETEVRLMATAGVRLLDLEVQDQILNVCRRVLRKSGFKFQDSWASVITGSDEGLYAWVVANYAL GALGGDPLETSGIIELGGASAQVTFVSTEPVPPEFSRTIKFGNISYNIYSHSFLHLGQIAAFEALRESLVSGDHHLAAAESLEKGIFKDPCTPKGYSHVV ESWKLSPGSLTEKNRFVSTLHSRGNFSECRSAALTLLQKGKERCSYQHCHIGSIFVPKLQGKFLATENFFHTSKFFGLDQRAFLLNLMIAGEQFCGEDWS RLKKKHQSFKDEDLALYCFSAAYIVALLHDSLGIAIDDQRIGFANQVGNIPLDWASGAFILYTNAALDMEEHSDWIVTIISDDPLTLLSLIGIAIVLIFV AWPISKWGKHQLKTFYDLERGWYIVTRGGKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.010G169100 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.001G197600 [exp]	5.29	0.7929
AT2G32970			unknown protein		Potri.002G224900 [exp]	5.83	0.7421
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	8.66	0.7245
AT1G04200			unknown protein		Potri.010G081800 [exp]	11.48	0.7213
AT3G60520			unknown protein		Potri.002G142600 [exp]	12.32	0.7072
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.015G098100 [exp]	14.83	0.7181
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.008G086400 [exp]	21.90	0.6723
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	24.10	0.7072
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	28.00	0.6771
AT4G38040			Exostosin family protein (.1)		Potri.007G117600 [exp]	28.56	0.6838

Compare expression of checked genes

Potri.010G169100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.