Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 235 / 1e-76 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 229 / 2e-74 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT1G14260 197 / 2e-62 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 139 / 7e-40 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 117 / 2e-31 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 94 / 9e-23 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 92 / 3e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 60 / 5e-10 RING/U-box superfamily protein (.1.2) AT4G32670 59 / 9e-10 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086300 [exp] 403 / 5e-143 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 153 / 4e-45 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 153 / 4e-45 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 150 / 5e-44 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 145 / 3e-42 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 144 / 1e-41 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 133 / 1e-37 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 101 / 1e-25 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 92 / 5e-22 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012826 [exp] 322 / 9e-111 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 307 / 3e-105 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 300 / 2e-102 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034454 [exp] 270 / 2e-90 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 269 / 4e-90 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 260 / 2e-86 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 254 / 3e-84 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10004058 [exp] 140 / 4e-40 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 132 / 4e-37 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034640 [exp] 131 / 3e-36 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.010G169200.1 pacid=42797918 polypeptide=Potri.010G169200.1.p locus=Potri.010G169200 ID=Potri.010G169200.1.v4.1 annot-version=v4.1 ATGAGTGATCACGTGGTGTTGGACGTTGACCAACTCATAAGGCCAGCGTCGACGGCGCCTGCTGAGGAGTCTGATAAGGCGATCGTCAAAGAGGCCGATG TCGGCCCTTCCTGCTCGAGGGCAAATGATGGAATCGATGATGGTATTTCGGGGGAGGAGGAGCCGTTGATTCAGGGGGCCGAGTGTCGCATTTGCCAGGA GGAGGATTCTGTTAGCAATTTAGAGAATCCTTGTGCCTGCAGTGGCAGCCTCAAGTATGCTCATAGGAAGTGCGTCCAGCATTGGTGCAATGAGAAAGGT GATATCACTTGTGAAATATGCCATCAGCCTTACCAACCAGGTTACACTGCTCCTCCTCGTCCACCTCATTCTGAAGATACTGGTATTGATATTGGTGGAG GCTGGACAATCTCTGGCACTCAACTGGATTTGCGTGATCCTCGCCTATTGGCAATTGCAGAGGCTGAGCGTCATTTTCTAGAAGCTGAGTATGATGACTA TGCTGCTTCAAATGCTAGCGGAGCCGCTTTTTGCCGCTCAGTTGCTCTTATTTTGATGGCCCTCCTGCTCTTGCGTCATGCATTGACTGCTACAGATTCT GATGGAGAAGATGATGTATCTGCATTTTTTTCTCTTTTCTTGCTTCGAGCAGCTGGTTTTCTTTTGCCCTGTTACATCATGGCTTGGGCCATCAGCATCT TGCAGCGTCGTAGGCAAAGACAGGAGGCAGCAGCATTAGCAGCAACACAAGTAGCTTTTGTGCTACAATCAGGGCAACAGAGGGGTCTGCAGTTTACCAT AGCACCGGGACCTACTGTAACACCTCACCAGGAACCTGTTTAA
AA sequence Show only first row Show all	>Potri.010G169200.1 pacid=42797918 polypeptide=Potri.010G169200.1.p locus=Potri.010G169200 ID=Potri.010G169200.1.v4.1 annot-version=v4.1 MSDHVVLDVDQLIRPASTAPAEESDKAIVKEADVGPSCSRANDGIDDGISGEEEPLIQGAECRICQEEDSVSNLENPCACSGSLKYAHRKCVQHWCNEKG DITCEICHQPYQPGYTAPPRPPHSEDTGIDIGGGWTISGTQLDLRDPRLLAIAEAERHFLEAEYDDYAASNASGAAFCRSVALILMALLLLRHALTATDS DGEDDVSAFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQQRGLQFTIAPGPTVTPHQEPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47550			RING/FYVE/PHD zinc finger supe...		Potri.010G169200 [exp]	0	1
AT1G19020			unknown protein		Potri.014G153900 [exp]	4.00	0.7290
AT2G43120			RmlC-like cupins superfamily p...		Potri.002G231900 [exp]	6.70	0.6758	Pt-PRN.2
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.003G181400 [exp]	7.54	0.7306	CCR.10,CCR7
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	12.00	0.6123
AT2G33360			Protein of unknown function (D...		Potri.008G171400 [exp]	17.66	0.6396
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.009G135201 [exp]	17.88	0.6191
AT5G42785			unknown protein		Potri.002G034300 [exp]	18.65	0.6977
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G005900 [exp]	20.56	0.6517
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	24.61	0.6610	SIP1.3
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	25.29	0.5999	Pt-SYP81.2

Compare expression of checked genes

Potri.010G169200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.