Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69600 152 / 2e-44 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G60480 138 / 1e-39 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT3G28920 136 / 2e-37 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT1G14440 130 / 2e-35 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT5G15210 106 / 9e-27 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT5G39760 98 / 5e-23 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT4G24660 80 / 3e-17 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G18350 80 / 5e-17 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G75240 80 / 8e-17 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT2G02540 80 / 8e-17 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086000 [exp] 420 / 3e-148 AT5G15210 167 / 8e-50 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Potri.004G126500 [exp] 176 / 1e-52 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.019G081300 [exp] 138 / 7e-39 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G229600 [exp] 132 / 6e-36 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.003G000400 [exp] 131 / 7e-36 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.007G024100 [exp] 118 / 1e-30 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.017G082900 [exp] 114 / 7e-29 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.004G135100 [exp] 112 / 7e-29 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.012G040900 [exp] 88 / 2e-20 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014302 [exp] 135 / 4e-37 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10036753 [exp] 125 / 3e-34 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005242 [exp] 111 / 5e-28 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10037175 [exp] 102 / 4e-26 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10012827 [exp] 100 / 2e-25 AT3G28920 91 / 6e-22 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Lus10033016 [exp] 81 / 1e-18 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10007147 [exp] 85 / 3e-18 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10010693 [exp] 80 / 3e-18 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10030473 [exp] 80 / 4e-18 AT5G39760 65 / 3e-13 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10015370 [exp] 79 / 5e-18 AT3G28917 100 / 5e-29 mini zinc finger 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [poplar] [flax] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.010G169400.1 pacid=42796933 polypeptide=Potri.010G169400.1.p locus=Potri.010G169400 ID=Potri.010G169400.1.v4.1 annot-version=v4.1 ATGACTAAAAAAGCCATGGACTCAACCACAAGCCCCCACCACATCACCAAATCCCCTGACTCGGACACAGATACTGAAACCCCACTCCAAACCCATCTCA CCAAGGCCTTATCCCTTACAAATGGCTCACACAAGACCCACCAAAATCGCCATCTTCCACCACCACCACAACAGCAAAATATGGTGGTGTCTTACAAAGA ATGCCACAAAAACCATGCTGCAGGTATTGGTGGACTAGCCTTGGATGGCTGTGGGGAGTTTATGCCCAAGTCAACTGCCACCCCTCAAGACCCTACCTCG TTCAAATGTGCTGCCTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCATCTGGCCCCACCACCATCACTCACATGCTACCACCACCAGCACTTAACT GGACCACGAGCTCAAGCCAAAGCCCAGGGTCAACAAGTTCAGGCCCAAGTCCTAGCCCAACATCACCGGCATCACCAAGCCCGCAGTCTTTCTACCCTTC TGCTCCTCACATGCTGTTGTCCTTGAGCTCTGGTCATTCTGGTCATCTCGATGAAACCCAGCTCCAGAAACAGAGTTACAGTCTCGCAATGACAAGCCCA CATGGGAAAAAGAGAGCAAGAACCAAGTTTAGTCAAGAACAGAGAGAGAAGATGTATCTTTTTGCTGAGAAGTTGGGGTGGAGGTTGCTGAGAGGCAATA ATGATAGAGGTGTTGAAGAGTTTTGCAGTGAAATCGGGGTTACTAGAAATGTTTTCAAAGTTTGGATGCATAACAATAGGTCCAGGAAAGAAAAGTTGAA TAATAGTTACGGTATTAATAGCAGCGACAAGTGTGGTTTTAATGCTAATGAGGAAGCTGGTAGAGTTGGTGCTGACAACAAAGGTTGCAGCTTCAACAAC AATGGGAGCAACTATGATAGCTTTGATAGGTACCAGATTGAGAGTAAAGTCCGTGTACATGGTTCTATGGCTCCCCATGGATCTTCTCCATCGTATTGA
AA sequence Show only first row Show all	>Potri.010G169400.1 pacid=42796933 polypeptide=Potri.010G169400.1.p locus=Potri.010G169400 ID=Potri.010G169400.1.v4.1 annot-version=v4.1 MTKKAMDSTTSPHHITKSPDSDTDTETPLQTHLTKALSLTNGSHKTHQNRHLPPPPQQQNMVVSYKECHKNHAAGIGGLALDGCGEFMPKSTATPQDPTS FKCAACGCHRNFHRREPSGPTTITHMLPPPALNWTTSSSQSPGSTSSGPSPSPTSPASPSPQSFYPSAPHMLLSLSSGHSGHLDETQLQKQSYSLAMTSP HGKKRARTKFSQEQREKMYLFAEKLGWRLLRGNNDRGVEEFCSEIGVTRNVFKVWMHNNRSRKEKLNNSYGINSSDKCGFNANEEAGRVGADNKGCSFNN NGSNYDSFDRYQIESKVRVHGSMAPHGSSPSY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69600	ZF_HD	ATHB29, ZFHD1, ...	ZINC FINGER HOMEODOMAIN 11, AR...		Potri.010G169400 [exp]	0	1
AT2G42760			unknown protein		Potri.006G129800 [exp]	9.79	0.7479
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	22.38	0.7681
AT1G08530			unknown protein		Potri.019G030400 [exp]	22.67	0.7897
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	27.14	0.7299
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.012G112301 [exp]	29.69	0.6803
					Potri.018G020301 [exp]	32.07	0.7080
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	40.98	0.7114
AT2G20830			transferases;folic acid bindin...		Potri.013G145600 [exp]	53.98	0.6981
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	62.92	0.6932
AT5G50340			ATP-dependent peptidases;nucle...		Potri.001G191200 [exp]	71.62	0.6778

Compare expression of checked genes

Potri.010G169400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.