Plant FIBer expression Database

Potri.010G169500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G02955 514 / 4e-174 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021646
[exp]
623 / 0 AT2G02955 442 / 4e-147 maternal effect embryo arrest 12 (.1)
Lus10034719
[exp]
342 / 2e-109 AT2G02955 370 / 5e-121 maternal effect embryo arrest 12 (.1)
Lus10004454
[exp]
274 / 3e-85 AT2G02955 204 / 8e-60 maternal effect embryo arrest 12 (.1)
Lus10016252
[exp]
201 / 4e-60 AT2G02955 148 / 2e-41 maternal effect embryo arrest 12 (.1)
Lus10030475
[exp]
132 / 3e-36 AT2G02955 109 / 3e-29 maternal effect embryo arrest 12 (.1)
Lus10030476
[exp]
128 / 2e-32 AT2G02955 79 / 5e-16 maternal effect embryo arrest 12 (.1)
Lus10016251
[exp]
119 / 1e-31 AT2G02955 114 / 6e-31 maternal effect embryo arrest 12 (.1)
Lus10012828
[exp]
120 / 3e-31 AT2G02955 68 / 8e-14 maternal effect embryo arrest 12 (.1)
Lus10016253
[exp]
104 / 2e-26 AT2G02955 63 / 8e-13 maternal effect embryo arrest 12 (.1)
Lus10034720
[exp]
0 / 1 AT2G02955 39 / 1e-04 maternal effect embryo arrest 12 (.1)
PFAM info
Representative CDS sequence
>Potri.010G169500.1 pacid=42799587 polypeptide=Potri.010G169500.1.p locus=Potri.010G169500 ID=Potri.010G169500.1.v4.1 annot-version=v4.1
ATGGAGCGAGAAGAAGGAGAGGTAAGAAACTTACAATGCGAATCATGCGGTTACATAGGTCTTGAAGAATCCGATGGCTTCTATTACTGCCAGCAATGCG
GTGCTCAAGCTCAAGGCATCATGGAAACCGGCGTCGCCGACGAAGACTTTGTTGAGAAAGGCCTTGACGCCGCCGCCCTCTACAGCCACCGCCACATCCG
CCGCTCCCAACCCACCCACTGCCCCCAACCCACCGCTGACCCCTCCTCCATTGCCTGGCTCAGCTTTACCCAAGAAGAAGCAGAACCCGACAACAACAAT
CATACTCAGAATTATATTAAGAGAGAAGATGATTATGGTTATGATTATAATGATGATGGGGTGTTTGGGCCTACAGAGCCTGAGGATTTTGGGGGGTTGA
GTAAAGCGAAGCTGAGTTACGAGGATTATTATAATGAGGTTAGGATTAAATATGTTTTAGGGATGGGGTTAATGATTCGGTTACAGTGTGAGGCTTTAGT
TGAAAAGTTTAACGTGACTCCATTAATTGTCGGGGTTGCTAGCACTGTTTGGTTAAGGTTTTTGCTTACTACTGGGGTTTTTAAGGATAGCTGGGCTAAT
GATGTTTTGATTGATTCCGAGATGCAAAAACCAGAAACCACCGAATTGTCAGTGGAACCAGAAGATAAGAGACGTGTTAGGTACCACCGTCATGAACCTC
GTAATTCATTTGGTCAGCGTGCAGTGCTAATATGGTTTAGGTATCTGAGAAAGGAAATACCACTGCATTATTCTTTAGTGATCTCGTTTTTGGCTTGTCA
TGTTGCTAGAGAAGCAGTTTTACCCACAGATATAGTGAAGTGGTCGGTCGAAGGGAAACTTCCTTATTTTGATGCTCATGTTGAAATTGAAAAACACTTT
GGACATTCGTCGCCTGCCTGTTGTATAAGTTCAAGTCTAATGTTCAGGCCTGTGCAAGCAGTTCCTATTCAGAAGTTGGAGTCAATGGCAGCCAGCATTG
CTGAGTCCATAGGCTTGCATTTGCCTCCAGTGTATTTCTATGGAATAGCGTCTCGCTATCTTAAGCAGTTGTCTCTTCCAGTTGAAAAGATTCTTCCACA
TGCGTGCCGCATATATGAGTGGTCAATGCCCCCAGATCAATGGTTTTCAACAAATGAGTTGAGGCTTCCTAGCCGTGTTTGTGTATTGTCAATACTGATT
GTAGCAATAAGAATTATCTACAACATAAATGGTTTTGGGGCATGGGAAGGAAGTTTGTCTGGTTATACAAGCAGACTAGACTTTCCTTGTAGCTCTCAAA
TGCGAGTTGATGAAAAAGATTCCGGTTCTCCTCACAAGCTGGATGATTCAGATGAGAAGTCTATTGGTAACAGATCGCATGTTCAGAGGTCTGAGTTAGA
TTCTGCAGAGCTTTTGCGCAACTTAGATGCTAAATACAATGAGATCAGTGATACCTATGAGTTCACAAGGGACTTGCCATCATATCTCCAATACTGTAAT
GAGGTGGTATTTTGTGGAGCAGGATCTTCGCATGTGAATCATCGGGAGGATGAGTTAATAAAGAAGTTGTGGGATTTTTATCAGAGTGAAAAGTATTCTG
ATCCGGCAGAAGATGATGGAGCACAAAATAGGACTGTTTTTAATGGAAAAAGATCGAGGAATGACAATGGATTAGCCAGAGATCAGATGGGAAAAAAGAA
AATTAGAGAAGAGACCCATGAATGCCTATCCACTGATACCTGCAATTCAACAGGAGATGAAAACAATGATGATTCAACGGAGACTGTCAAAGATAAAGCC
ATTAGAAAGTTGAAATTAGACATGGCAGAGAATAGGTTCTATTACATTCCACCAAGGCTCAAAATCAAGAGATTTGATTACCTCCACTATGTACGGAGGG
TAGGTGATGGTGCGTTAACTTATGTTGCCCATGCAGATTATTATATTTTGCTTCGTAGTTTTGCTAGAGCTGCTCAGGTTGATACCCGGATAATGCATAT
CGGGGTAATGAATTTTGAGAGAAGAGTGGCTTGGATGGAAAAAAGAATCGACTACTGTTTGCACTTGACACCTCCCAGTTTTACCTGTGAGTATTGTAGA
GACGTGCCAGATCATTCTGATGATGACGATGCAATTGGACTTTCGCAGTTGCATTTGTGA
AA sequence
>Potri.010G169500.1 pacid=42799587 polypeptide=Potri.010G169500.1.p locus=Potri.010G169500 ID=Potri.010G169500.1.v4.1 annot-version=v4.1
MEREEGEVRNLQCESCGYIGLEESDGFYYCQQCGAQAQGIMETGVADEDFVEKGLDAAALYSHRHIRRSQPTHCPQPTADPSSIAWLSFTQEEAEPDNNN
HTQNYIKREDDYGYDYNDDGVFGPTEPEDFGGLSKAKLSYEDYYNEVRIKYVLGMGLMIRLQCEALVEKFNVTPLIVGVASTVWLRFLLTTGVFKDSWAN
DVLIDSEMQKPETTELSVEPEDKRRVRYHRHEPRNSFGQRAVLIWFRYLRKEIPLHYSLVISFLACHVAREAVLPTDIVKWSVEGKLPYFDAHVEIEKHF
GHSSPACCISSSLMFRPVQAVPIQKLESMAASIAESIGLHLPPVYFYGIASRYLKQLSLPVEKILPHACRIYEWSMPPDQWFSTNELRLPSRVCVLSILI
VAIRIIYNINGFGAWEGSLSGYTSRLDFPCSSQMRVDEKDSGSPHKLDDSDEKSIGNRSHVQRSELDSAELLRNLDAKYNEISDTYEFTRDLPSYLQYCN
EVVFCGAGSSHVNHREDELIKKLWDFYQSEKYSDPAEDDGAQNRTVFNGKRSRNDNGLARDQMGKKKIREETHECLSTDTCNSTGDENNDDSTETVKDKA
IRKLKLDMAENRFYYIPPRLKIKRFDYLHYVRRVGDGALTYVAHADYYILLRSFARAAQVDTRIMHIGVMNFERRVAWMEKRIDYCLHLTPPSFTCEYCR
DVPDHSDDDDAIGLSQLHL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G02955 MEE12 maternal effect embryo arrest ... Potri.010G169500
[exp]
0 1
AT3G18680 Amino acid kinase family prote... Potri.007G110201
[exp]
5.74 0.9073
AT2G26530 AR781 Protein of unknown function (D... Potri.001G274000
[exp]
12.60 0.9232
Potri.002G088800
[exp]
14.24 0.9175
AT2G06000 Pentatricopeptide repeat (PPR)... Potri.006G141800
[exp]
14.83 0.8410
AT1G13245 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 ... Potri.010G129600
[exp]
22.20 0.9010
AT1G10280 Core-2/I-branching beta-1,6-N-... Potri.004G228100
[exp]
31.46 0.9029
AT3G48480 Cysteine proteinases superfami... Potri.015G090800
[exp]
33.16 0.8761
AT3G13440 S-adenosyl-L-methionine-depend... Potri.001G073700
[exp]
35.91 0.8799
AT1G16770 unknown protein Potri.004G169900
[exp]
36.46 0.9050
AT1G44760 Adenine nucleotide alpha hydro... Potri.002G084600
[exp]
36.66 0.8916

Potri.010G169500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.