Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18630 384 / 2e-134 ATUNG uracil dna glycosylase (.1) AT2G10550 43 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012898 [exp] 441 / 1e-156 AT3G18630 430 / 6e-152 uracil dna glycosylase (.1) Lus10030553 [exp] 431 / 1e-152 AT3G18630 427 / 6e-151 uracil dna glycosylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03167 [poplar] [flax] UDG Uracil DNA glycosylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.010G169600.2 pacid=42798384 polypeptide=Potri.010G169600.2.p locus=Potri.010G169600 ID=Potri.010G169600.2.v4.1 annot-version=v4.1 ATGGCTGCCTCTTCCAAAACAATAATGGATTTCCTCCAACCCGCCAAGCGCCTTAAACTCTCTTCCTCCTCTCCTTCCCCAATAGACCCCTTAAATCTCT TAAACAAATCACTCTCTGCAAAATCAACCTCCACCGACCTCACTCCTGACCAAGTATCCCGCATCGAACTCAACAAACTACGCGCCAAATCCAAACGCAA CCTCAAACTGTGTTCTCAACTAGTCTCCAATTCCAAAGGTTCCTCCGGGCATGTGAATTTAGAGGAACTGTTGGTGGAGAACACGTGGCGAGAGGTGCTG CCAGGGGAGTTGGAAAAGCCGTATTTTAAGAATCTGTGTAAATTTGTGGAAAGTGAGATTAGTAACGGGAGTGTAGCTATATACCCACCGCAGCATTTGA TTTTCAATGCCTTGAATTCGACACCGTTTAATACGCTCAAGGCTGTTATCATCGGACAGGATCCTTATCATGGCCCTGGTCAGGCAATGGGGCTTTCTTT TTCTGTGCCTCAAGGGGTTAAGGCACCTTCTAGTCTTGTTAATATTTTCAAGGAACTTAAGCAGGATCTGGGGTGTTCCATTCCGTCTCATGGGAATCTT GAAAAATGGGCTATTCAGGGTGTTCTATTGCTCAACACAGTTCTCACTGTTAGGAATCACCAAGCGAATTCTCATTCAAAGAAAGGATGGGAGCATTTCA CTGACGCTGTTATCAAAACAATTTCACAGAAGAAGGAAGGAGTTGTTTTTCTTCTTTGGGGTAACTCAGCTCAGGAGAAATCCAAGTTAATTGACCAGAC AAAGCATCACATTCTGAAGGCTGCACATCCTTCTGGCTTGTCTGCAAACAGAGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACAAATAAGCTTTTGGCG CAAATGGGAATTTCCCCAATAGAATGGCAACTTTGA
AA sequence Show only first row Show all	>Potri.010G169600.2 pacid=42798384 polypeptide=Potri.010G169600.2.p locus=Potri.010G169600 ID=Potri.010G169600.2.v4.1 annot-version=v4.1 MAASSKTIMDFLQPAKRLKLSSSSPSPIDPLNLLNKSLSAKSTSTDLTPDQVSRIELNKLRAKSKRNLKLCSQLVSNSKGSSGHVNLEELLVENTWREVL PGELEKPYFKNLCKFVESEISNGSVAIYPPQHLIFNALNSTPFNTLKAVIIGQDPYHGPGQAMGLSFSVPQGVKAPSSLVNIFKELKQDLGCSIPSHGNL EKWAIQGVLLLNTVLTVRNHQANSHSKKGWEHFTDAVIKTISQKKEGVVFLLWGNSAQEKSKLIDQTKHHILKAAHPSGLSANRGFFGCRHFSRTNKLLA QMGISPIEWQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Potri.010G169600 [exp]	0	1
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	18.76	0.6614
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G189100 [exp]	21.72	0.6697
AT3G51010			unknown protein		Potri.007G018300 [exp]	21.81	0.6884
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	28.14	0.6689
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Potri.013G021500 [exp]	50.99	0.5793
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	73.89	0.6263	RAD23.1
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	78.58	0.5647
AT4G02010			Protein kinase superfamily pro...		Potri.014G119100 [exp]	96.94	0.6038
AT2G46520			cellular apoptosis susceptibil...		Potri.002G172700 [exp]	98.74	0.5635
AT5G23890			unknown protein		Potri.012G142500 [exp]	107.12	0.5784

Compare expression of checked genes

Potri.010G169600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.