Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27640 1584 / 0 ARM repeat superfamily protein (.1) AT5G19820 247 / 1e-67 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT2G16950 65 / 2e-10 ATTRN1 transportin 1 (.1.2) AT2G16960 55 / 3e-07 ARM repeat superfamily protein (.1.2) AT2G31660 45 / 0.0004 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085800 [exp] 1850 / 0 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 253 / 1e-69 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 248 / 5e-68 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 227 / 7e-61 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 93 / 6e-19 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 83 / 5e-16 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 46 / 0.0002 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.014G149600 [exp] 45 / 0.0002 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029067 [exp] 1673 / 0 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10034202 [exp] 1655 / 0 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10013763 [exp] 164 / 3e-41 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 164 / 6e-41 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10025083 [exp] 50 / 1e-05 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 48 / 4e-05 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025509 [exp] 46 / 0.0002 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G169800.1 pacid=42798106 polypeptide=Potri.010G169800.1.p locus=Potri.010G169800 ID=Potri.010G169800.1.v4.1 annot-version=v4.1 ATGGCACAGTCACTTGAATTGCTGCTGATTCAATTCTTGATGCCAGACAACGATGCCAGAAGGCAAGCCGAGGAGCAAATTAAGAGGTTAGCCAAAGATC CTCAAGTGGTCCCAGCCCTTGCTCAACACCTTCGCACCGCCAAAACTCCCAATGTCCGCCAGCTCGCCGCCGTGCTCCTCCGCAAGAAGGTCACGGGGCA CTGGGCTAAACTCCCTCCTCAACTCAAACTCCTTGTCAAACAATCTCTCATTGAAAGCATCACCATGGAACACAGTCCTCCAGTGAGGAAAGCGAGTGCG AATGTGGTGAGTATAATTGCGAAATATGCAGTTCCGGCTGGAGAATGGCCTGATTTGTTGCCCTTTTTGTTTCAATGTAGTCAAAGTGCACAGGAAGATC ATAGAGAAGTGGCATTGATCCTTTTCAGCTCTTTAACTGAAACTATTGGGAATGCATTTCAACCTCATCTTGCTGGTTTGCAAGCTCTTTTGCTCAAGTG TTTGCAGGATGATACTAGCAACCGTGTTAGAGTTGCTGCTCTCAAGGCAGTGGGATCTTTTATTGAATTTACAAATGACGGGGATGAAGCGATCAAATTT CGCCAGTTCATTCCCAGCATTTTAAATGTGGCTAGACAATGCCTTTCATCTGGTGACGAGGATGTTGCAATAATTGCTTTCGAAATCTTTGATGAACTGA TTGAATCTCCTGCACCTCTTCTTGGAGACTCTGTTAAATCCATTGTGCAGTTCTCTCTTGAAGTTTGTTCTAGTCAAAATTTGGAGTCCAACACACGTCA TCAGGCTATTCAGATAATTTCATGGCTGGCAAAGTACAAACACGGTTCCCTGAAAAAGTATAACCTGGTCATCCCCATTCTGCAAGTGATGTGCCCCTTG CTTGCAGAATCAGCTGATGCTGATGAAGATGATGATCTTGCTCCTGATCGAGCAGCTGCAGAAGTCATTGACACCATGGCTTTGAACCTCTCAAAGCATG TCTTTCCCACTGTCTTTGAGTTTGCTTCCTTAAGCAGTCAGAGCGCAAATCCAAAGTTCCGGGAAGCTTCTGTTACAGCTTTAGGTGTTGTTTCAGAGGG TTGTCTGGAGTTGATGAAAGATAAATTGGAATCTGTTCTTCATATTGTTTTAGGGGCTTTGAGGGATCCAGAACAAATGGTTAGAGGGGCTGCATCATTT GCCTTGGGTCAATTTGCTGAGCATTTGCAGCCTGAAATTGTGTCTCACTATGGAAGTGTTCTTCCCTGCATTTTAAATGCTCTTGAGGATGCATCTGATG AAGTAAAGGAAAAGTCGTACTACGCGTTAGCAGCATTTTGTGAGGACATGGGTGAAGAAATTCTTCCTTTCCTTGATCCTTTGATGGGGAAGCTACTTGC AGCCCTCCAAAATAGCCCTCGTAATTTGCAGGATACATGCATGTCTGCAATTGGTTCAGTTGCAACTGCTGCTGAGCAAGCTTTCATTCCTTATGCTGAA AGGGTTCTTGAGTTAATGAAATCCTTCATGGTGCTTACCAATGATGAGGATCTCCGATCACGAGCAAGGGCTACTGAGCTTGTAGGAATAGTTGCCATGT CTGCTGGGAGAGCGAGGATGGAACCGATTCTTCTCCCTTTCATGGAAGCTGCAATTTCTGGTTTTGGATTGGAGTTCAGCGAGCTTCGGGAGTATACTCA TGGATTCTTTAGCAATGTAGCAGAAATAATGGATGATAGCTTTACACAGTATCTTCCTCATGTTGTACCCCTGGCATTCGCTTCCTGCAATCTTGATGAT GGTTCTGCGGTGGACATCATTGAATCTGATGATGAAAATATCAATGGATTTGGTGGAGTCTCATCTGATGATGAAGCTCATGATGAACCAAGAGTTCGGA ATATCAGTGTTAGAACAGGAGTGTTGGATGAAAAGGCAGCTGCAACTCAAGCACTTGGCTTATTTGCACTTCACACAAAGAGTTCTTATGCCCCCTATTT GGAGCAGACATTAAAGATTCTGGTGAGACATTCAGGGTATTTCCATGAAGATGTTCGGCTTCAGGCTATCATTGCTTTGAAATCTATTCTGACTGCAGCA CATGCACTCTTCCAGAGTCAAAATGCCCAACAGGAAAAAGCAAGAGAAATGCTTGATACTGTGATGGATATTTACATCAAGACTATGACTGGAGATGATG ACAAGGAAGTAGTTGCTCAAGCGTGTACAAGTGTGGCAGACATCATTAAGGATTATGGTTATGCAGCTATTGAACCTTATATGTCTCGGCTTGTTGATGC AACTTTGGTATTACTTAAAGAGGAGTCAGCTTGTCAGCAACTGGAAGATGATAGTGATATGGATGATGATGATACGGAACATGATGAAGTGCTTATGGAT GCAGTTTCTGATCTTCTTCCTGCATTTGCAAAGTCCATGGGTTCTCATTTTGCACCCATCTTTGCTAACCTATTTGAGCCTTTGATGAAATTTGCGAAAG CTTCACGCCCTCTGCAAGATCGAACTATGGTGGTTGCTTGCCTTGCAGAAGTTGCTCAGGACATGGGTGCCCCAATTGCGGGTTATGTTGATAGGGTGAT GCCCTTGGCGATCAAAGAACTTGCTTCATCAGATGCAACTAACAGGAGGAATGCTGCATTTTGTGTTGGAGAATTGTGCAAAAATGGCGGGGAGTCAACT TTGAAATATTATGGTGATATATTGCGTGGACTCTTCCCTTTATTTGGAGAGCCTGAGCCAGATGATGCTGTTAGGGATAATGCAGCTGGTGCAGTTGCAA GGATGATAATGGCACATCCCCAGGCTGTCCCATTAAATCAGGTTCTTCCTGTTTTCCTGAAAGTTCTCCCACTGAAAGAAGATCATGAAGAGTCCATGGC TGTCTACAGTTGTGTCTCTACTCTCGTTTTGTCATCCAATCAACAGATCCTTGCACTTGTTCCAGAGCTGGTCAATCTTTTTGCTCAGGTTGTGGTTTCT CCAGTTGAAACTGCTGAAGTCAAGGCTCAAGTTGGAAGAGCTTTTGCACACCTGATTTCACTCTATGGCCATCAAATGCAACCTCTATTAAGTAACCTAT CGCCTGCACATGCTAGTGCTTTAGGTGCATTTGCCCCCAAAAGCTGA
AA sequence Show only first row Show all	>Potri.010G169800.1 pacid=42798106 polypeptide=Potri.010G169800.1.p locus=Potri.010G169800 ID=Potri.010G169800.1.v4.1 annot-version=v4.1 MAQSLELLLIQFLMPDNDARRQAEEQIKRLAKDPQVVPALAQHLRTAKTPNVRQLAAVLLRKKVTGHWAKLPPQLKLLVKQSLIESITMEHSPPVRKASA NVVSIIAKYAVPAGEWPDLLPFLFQCSQSAQEDHREVALILFSSLTETIGNAFQPHLAGLQALLLKCLQDDTSNRVRVAALKAVGSFIEFTNDGDEAIKF RQFIPSILNVARQCLSSGDEDVAIIAFEIFDELIESPAPLLGDSVKSIVQFSLEVCSSQNLESNTRHQAIQIISWLAKYKHGSLKKYNLVIPILQVMCPL LAESADADEDDDLAPDRAAAEVIDTMALNLSKHVFPTVFEFASLSSQSANPKFREASVTALGVVSEGCLELMKDKLESVLHIVLGALRDPEQMVRGAASF ALGQFAEHLQPEIVSHYGSVLPCILNALEDASDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALQNSPRNLQDTCMSAIGSVATAAEQAFIPYAE RVLELMKSFMVLTNDEDLRSRARATELVGIVAMSAGRARMEPILLPFMEAAISGFGLEFSELREYTHGFFSNVAEIMDDSFTQYLPHVVPLAFASCNLDD GSAVDIIESDDENINGFGGVSSDDEAHDEPRVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPYLEQTLKILVRHSGYFHEDVRLQAIIALKSILTAA HALFQSQNAQQEKAREMLDTVMDIYIKTMTGDDDKEVVAQACTSVADIIKDYGYAAIEPYMSRLVDATLVLLKEESACQQLEDDSDMDDDDTEHDEVLMD AVSDLLPAFAKSMGSHFAPIFANLFEPLMKFAKASRPLQDRTMVVACLAEVAQDMGAPIAGYVDRVMPLAIKELASSDATNRRNAAFCVGELCKNGGEST LKYYGDILRGLFPLFGEPEPDDAVRDNAAGAVARMIMAHPQAVPLNQVLPVFLKVLPLKEDHEESMAVYSCVSTLVLSSNQQILALVPELVNLFAQVVVS PVETAEVKAQVGRAFAHLISLYGHQMQPLLSNLSPAHASALGAFAPKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.001G026900 [exp]	4.00	0.7775
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Potri.008G206000 [exp]	6.00	0.7891	GCR1.1
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G146300 [exp]	7.93	0.7369
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G188600 [exp]	9.59	0.7082	AHA6.4
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	11.61	0.8082
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	17.46	0.7840
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	18.70	0.7314	TIM50.1
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.011G139100 [exp]	21.44	0.7324
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	22.80	0.7041
AT2G45670			calcineurin B subunit-related ...		Potri.014G074300 [exp]	23.06	0.7143

Compare expression of checked genes

Potri.010G169800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.