Plant FIBer expression Database

Potri.010G169900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33540 421 / 8e-148 metallo-beta-lactamase family protein (.1)
AT2G43430 44 / 0.0001 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2)
AT2G31350 44 / 0.0001 GLX2-5 glyoxalase 2-5 (.1.2)
AT1G06130 41 / 0.0007 GLX2-4 glyoxalase 2-4 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G085751
[exp]
71 / 4e-15 AT4G33540 52 / 4e-09 metallo-beta-lactamase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008550
[exp]
469 / 3e-166 AT4G33540 387 / 6e-134 metallo-beta-lactamase family protein (.1)
Lus10027583
[exp]
327 / 3e-110 AT4G33540 271 / 1e-88 metallo-beta-lactamase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0381 Metallo-HOrase PF00753 Lactamase_B Metallo-beta-lactamase superfamily
CL0344 4Fe-4S PF13370 Fer4_13 4Fe-4S single cluster domain of Ferredoxin I
Representative CDS sequence
>Potri.010G169900.1 pacid=42798711 polypeptide=Potri.010G169900.1.p locus=Potri.010G169900 ID=Potri.010G169900.1.v4.1 annot-version=v4.1
ATGGCTGTGAAGATTACTGCAGATTTGAGGTTCCCAGAGGTGGGGCTACCTTCTTCGCCATTTAGTGGTCAAAGGAGGTTGAACGCAAATTCAAAGGGCG
GTAAAGTTTCTGTGATTAGAGCAATCCAAAGCCAAGAGGAAGCAGCAGCTGCAGGTCCTACTTCCACTCGATATCAGGCTAGACGAACGAGACGGCCCCA
GAATATAGAAGGAGACTTCTTTGTAGATCACACATGCATAGATTGTGATACCTGCCGTTGGATGGCTCCACAAGTCTTCACACGAATTGGTGAGATGTCT
GCAGTTTTTAAGCAGCCTACTTCTGGGGAGGAACGCCTCAAAGCTCTTCAGGCCTTACTCTCTTGTCCAACAAGTTCAATCCATACTGAGAAACCTGCTT
CAGATATTCTTCAAGCTCAGAAAACATTCCCAACACCAATTGATCAGCAGAGAATTCCGGGTGTGTACCACTGTGGATATCATTCAGAGAAATCTTATGG
AGCAGCTTCCTTCTTGATTGTCCATCCTGAAGGAAATATAATTATAGACAGTCCTAGATATACAGAGAGACTGGCTCGTAACATTGAGATGCTGGGTGGA
GCACGTTACATGTTTCTTACCCATGAGGATGATGTTGCAGATCATAGGAAGTGGTCAGAGAGGTTAAGCTGTGACAGAATTCTGCACTCAGTAGATGTTG
ACAACTCTACTGCTGATGTTGAAACAAAGCTACAGGGTACTGGTCCATGGAACCTTGGAAGGGACGTCCAGCTTATACATACTCCAGGCCACACAGAAGG
ATCAATCTGCTTATTCTACAAGCCACTGAAGATATTATTCACTGGAGACCATCTACTGATGACAGAAACAGGGCTGAGCATTTGCGAGAGATACAATAAA
TGTTCAGTTCCAATGCAAATAGATAGCGTCCTCAAGCTGCTAGAAATAGACTTCAACTGGATCATACCAGGTCACGGGAGGAGAGTTGAATTCAAGGATC
GTGAGGAGAAAGATTCAATTCTGAAAGCCTTTGTGGAGGAGAATTACAGTCAGTGTAGGTGA
AA sequence
>Potri.010G169900.1 pacid=42798711 polypeptide=Potri.010G169900.1.p locus=Potri.010G169900 ID=Potri.010G169900.1.v4.1 annot-version=v4.1
MAVKITADLRFPEVGLPSSPFSGQRRLNANSKGGKVSVIRAIQSQEEAAAAGPTSTRYQARRTRRPQNIEGDFFVDHTCIDCDTCRWMAPQVFTRIGEMS
AVFKQPTSGEERLKALQALLSCPTSSIHTEKPASDILQAQKTFPTPIDQQRIPGVYHCGYHSEKSYGAASFLIVHPEGNIIIDSPRYTERLARNIEMLGG
ARYMFLTHEDDVADHRKWSERLSCDRILHSVDVDNSTADVETKLQGTGPWNLGRDVQLIHTPGHTEGSICLFYKPLKILFTGDHLLMTETGLSICERYNK
CSVPMQIDSVLKLLEIDFNWIIPGHGRRVEFKDREEKDSILKAFVEENYSQCR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33540 metallo-beta-lactamase family ... Potri.010G169900
[exp]
0 1
AT4G27340 Met-10+ like family protein (.... Potri.011G125700
[exp]
4.47 0.9077
AT5G38290 Peptidyl-tRNA hydrolase family... Potri.004G098100
[exp]
11.26 0.9123
AT5G17460 unknown protein Potri.004G091600
[exp]
23.23 0.8828
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.009G048000
[exp]
24.37 0.8179
AT4G27390 unknown protein Potri.001G405800
[exp]
25.09 0.9045
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.011G113575
[exp]
26.38 0.8660
AT3G04310 unknown protein Potri.019G023400
[exp]
30.62 0.8846
AT4G21580 oxidoreductase, zinc-binding d... Potri.004G036100
[exp]
39.64 0.8225
AT5G50915 bHLH bHLH137 basic helix-loop-helix (bHLH) ... Potri.015G104200
[exp]
44.15 0.8524
AT3G12930 Lojap-related protein (.1) Potri.001G458600
[exp]
49.59 0.8714

Potri.010G169900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.