Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DIM.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19820 991 / 0 CBB1, EVE1, DW1, DIM1, DWF1 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) AT5G56970 48 / 1e-05 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G41510 45 / 0.0002 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 44 / 0.0002 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084800 [exp] 1143 / 0 AT3G19820 993 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Potri.016G040300 [exp] 51 / 2e-06 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.011G159600 [exp] 43 / 0.0005 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G221000 [exp] 43 / 0.0006 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.011G161100 [exp] 42 / 0.0007 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010215 [exp] 751 / 0 AT3G19820 711 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10017412 [exp] 609 / 0 AT3G19820 583 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10017413 [exp] 232 / 7e-74 AT3G19820 216 / 2e-68 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10038446 [exp] 45 / 0.0002 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G170000.2 pacid=42797293 polypeptide=Potri.010G170000.2.p locus=Potri.010G170000 ID=Potri.010G170000.2.v4.1 annot-version=v4.1 ATGTCTGATCTCGAGGCCCCCCTGCGCCCAAAGAGGAAGAAGGTGTGGGTAGACTATTTTGTCCAGTTCAGATGGATCTTAGTTATTTTTGTTGTTCTCC CAATCTCCTTCACCCTTTACTTTCTCACTTACCTTGGGGATGTCAAATCAGAGATGAAATCCTACAAACAGCGTCAGAAGGAACATGATGAAAATGTTAA AAAAGTGGTGAAACGCCTCAAAGAGAGGAATCCATCCAAGGATGGTCTTGTTTGCACTGCTCGTAAACCCTGGATTGCTGTTGGAATGCGGAATGTTGAC TATAAACGGGCTCGGCACTTTGAAGTTGATTTATCATCTTTCCGTAATATCCTTGAAATTGACAGAGAGAGAATGGTTGCAAGAGTTGAGCCACTTGTAA ATATGGGACAGATTAGCAGGGCGAGTGTCCCAATGAATCTTTCCCTTGCAGTGGTTGCAGAACTTGATGATCTCACTGTTGGTGGGCTAATTAATGGTTA TGGGATTGAAGGAAGCTCTCACATCTATGGCTTGTTCTCTGACACTGTTGTGGCTTATGAGATTGTTTTGGCAGATGGCCAGGTTGTTAGAGCCACCAAG GACAATGAATACTCTGATCTTTTCTATGCCATCCCTTGGTCTCAGGGAACACTTGGGCTTCTTGTCTCTGCTGAGATCAAGCTTATTCCCGTTAAGGAAT ACATGAGGCTGACCTACAAACCTGTGGTGGGTAATCTGAAAGAACTTGCACAGGCCTATATAGACTCTTTTGCACCCAGAGATGGAGATCAGGATAACCC GAGCAAGGTTCCAGACTTTGTGGAGACTATGATTTATAACTCTACCGATGGTGTGATGATGACAGGGAGATATGCCTCCAAAGAAGAGGCCAAGAAGAAG GGAAATGTGATTAACAATGTTGGTTGGTGGTTTAAACCGTGGTTCTATCAGCATGCGCAGACAGCCCTAAAGAAAGGGGAGTTTGTAGAGTACATTCCAA CCAGAGAATATTACCACAGGCACACAAGGTGTTTGTACTGGGAGGGGAAGCTCATACTTCCATTTGCTGACCAATGGTGGTTTAGATTTCTCTTAGGCTG GATGATGCCTCCAAAGGTTTCTCTTCTCAAGGCTACTCAAGGTGAAGCAATCAGAAACTATTACCATGAGATGCATGTCATTCAGGATATGCTTGTTCCT CTTTACAAGGTTGGGGATGCCCTAGAATGGGTCGACCGTGAGATGGAGGTATATCCCATTTGGCTTTGTCCGCACAGGTTGTTCAAGCTTCCTGTGAAAA CTATGGTGTATCCTGAGCCAGGGTTTGAGCATCAGCACAGACAGGGAGACACATCCTATGCCCAGATGTACACCGATGTTGGGGTGTATTATTCACCTGG ACCTGTGTTGAGGGGTGAGGTGTTTGAAGGTGCAGATGCAGTTCGTAGAATGGAGGACTGGTTGATAGAAAACCACGGCTTCCAGCCTCAGTATGCAGTG TCTGAGCTGAATGAGAAGAAATTCTGGAGGATGTTTGATGCTGACCTCTATGAACACGCCAGGAAGAAATATGGAGCTGTGGGAACCTTCATGAGCGTGT ACTACAAATCCAAGAAAGGAAGGAAGACGGAGAAGGAGGTGCAGGAAGCAGAACAAGCCCACCTTGAGACTGCTTATGCTGAGGCTGGTTAG
AA sequence Show only first row Show all	>Potri.010G170000.2 pacid=42797293 polypeptide=Potri.010G170000.2.p locus=Potri.010G170000 ID=Potri.010G170000.2.v4.1 annot-version=v4.1 MSDLEAPLRPKRKKVWVDYFVQFRWILVIFVVLPISFTLYFLTYLGDVKSEMKSYKQRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD YKRARHFEVDLSSFRNILEIDRERMVARVEPLVNMGQISRASVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK DNEYSDLFYAIPWSQGTLGLLVSAEIKLIPVKEYMRLTYKPVVGNLKELAQAYIDSFAPRDGDQDNPSKVPDFVETMIYNSTDGVMMTGRYASKEEAKKK GNVINNVGWWFKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRFLLGWMMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVP LYKVGDALEWVDREMEVYPIWLCPHRLFKLPVKTMVYPEPGFEHQHRQGDTSYAQMYTDVGVYYSPGPVLRGEVFEGADAVRRMEDWLIENHGFQPQYAV SELNEKKFWRMFDADLYEHARKKYGAVGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.010G170000 [exp]	0	1	DIM.3
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	1.73	0.6818	Pt-IAA8.4
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	4.47	0.6202
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.001G265200 [exp]	8.00	0.6056	ARP7.1,ARP903
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.013G106000 [exp]	17.23	0.5457
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.009G010800 [exp]	23.23	0.5322
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	30.72	0.5796	AGO903,AGO4.1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	34.87	0.5559	STM.2
AT1G15170			MATE efflux family protein (.1...		Potri.010G116900 [exp]	39.82	0.5094
AT3G03773			HSP20-like chaperones superfam...		Potri.013G062600 [exp]	42.34	0.5742
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	42.56	0.5729

Compare expression of checked genes

Potri.010G170000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.