Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19810 285 / 2e-95 Protein of unknown function (DUF177) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010214 [exp] 289 / 8e-98 AT3G19810 299 / 4e-102 Protein of unknown function (DUF177) (.1) Lus10017411 [exp] 278 / 1e-90 AT3G19810 255 / 2e-81 Protein of unknown function (DUF177) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02620 [poplar] [flax] YceD Large ribosomal RNA subunit accumulation protein YceD
Representative CDS sequence Show only first row Show all	>Potri.010G170100.2 pacid=42799560 polypeptide=Potri.010G170100.2.p locus=Potri.010G170100 ID=Potri.010G170100.2.v4.1 annot-version=v4.1 ATGTCACTTGTCTACTTCACATCCCCAATAGCTCTATCCCCGCACATTAACCAATTTAAAGTAGATGATTTGTTCTCCCAAAAAATTTCTCTATCAAATC CAAGCTTTTCCGTTGTTGATTGCAAAATTTCAAGGGGTGTAAGAAAGAGTGCATGTGATGTTTTTAGAAACAAATCACAAAGTATTATAAGGTTTACTAC AAGACATGCAGTGTACTCTAACAGTCAGAAGTTTACTGATGTATCTCTTAATTGGGATGATCAAGAGGAAGAAGACGCTGAAGACATGGAATCACCATGG GAAGGTGCTATTATTTACAAGAGAAATTCTTCAATTTCACATGTGGAGTACTGCACAACTTTAGAAAGGCTTGGGTTAGGAAAACTTTCAACTGAGATTT CAAAATCAAGGGCTTCGGTAATGGGATTACGTGTCACGAAGGCCGTGAAGGATTACCCTCTTGGAACTCCTGTTCAAATCTCCATTGACGTGACAAAGAA GAAGAAAAGGTTGAGACTAGATGGGATCATCAAAACTGTCATCACTCTTGGTTGCTATAGGTGTGGAGAGCCAGTTGCTGAGGGCATTTTCTCCAACTTC TCTCTCTTACTATCTGAAGAACCCGTGGCAGAACCAGAGATTATTAATATGGGGAAAGTATTTGGTAATGATAAATTGAAATCTTCAATTTTTGAGGAAG AAGACGGTGATGAAGCTTCAATCGAGTGGGACGACCGGTTGCACTTCCCTCCTGAAGATAAGGAAATTGATATTTCAAAGCCCCTCCGAGATATGGTGCA TGTAGAAATTACCCTTGATGTCATCTGTGATCCAAGCTGCAAAGGTTTATGCCTCGAGTGTGGTACAAACTTGAACAAGAGCAGTTGTAACTGTAGCAAA GAGAAGGAGAAGGAGAGAGGACCCGGCCCTCTTAAAGATCTGAAAAAACAGATGCTGTCAGAATCTTAG
AA sequence Show only first row Show all	>Potri.010G170100.2 pacid=42799560 polypeptide=Potri.010G170100.2.p locus=Potri.010G170100 ID=Potri.010G170100.2.v4.1 annot-version=v4.1 MSLVYFTSPIALSPHINQFKVDDLFSQKISLSNPSFSVVDCKISRGVRKSACDVFRNKSQSIIRFTTRHAVYSNSQKFTDVSLNWDDQEEEDAEDMESPW EGAIIYKRNSSISHVEYCTTLERLGLGKLSTEISKSRASVMGLRVTKAVKDYPLGTPVQISIDVTKKKKRLRLDGIIKTVITLGCYRCGEPVAEGIFSNF SLLLSEEPVAEPEIINMGKVFGNDKLKSSIFEEEDGDEASIEWDDRLHFPPEDKEIDISKPLRDMVHVEITLDVICDPSCKGLCLECGTNLNKSSCNCSK EKEKERGPGPLKDLKKQMLSES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19810			Protein of unknown function (D...		Potri.010G170100 [exp]	0	1
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G115900 [exp]	2.00	0.9733	CLPR2.1
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	4.89	0.9750
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	6.48	0.9749	Pt-HHOA.1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.001G075800 [exp]	6.70	0.9691
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	7.14	0.9736
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Potri.009G124100 [exp]	7.48	0.9700
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	9.48	0.9687
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G028500 [exp]	9.79	0.9611
AT2G27290			Protein of unknown function (D...		Potri.009G161800 [exp]	10.90	0.9646
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	11.61	0.9718

Compare expression of checked genes

Potri.010G170100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.