Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19830 753 / 0 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G50260 738 / 0 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2) AT5G04220 71 / 2e-12 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 67 / 3e-11 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 62 / 1e-09 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 61 / 2e-09 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 57 / 2e-08 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT3G61050 53 / 6e-07 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G05330 52 / 6e-07 AGD13 ARF-GAP domain 13 (.1) AT5G11100 49 / 9e-06 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085000 [exp] 1084 / 0 AT3G19830 787 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 75 / 9e-14 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 71 / 1e-12 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 70 / 2e-12 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.005G241700 [exp] 69 / 4e-12 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 68 / 1e-11 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G379800 [exp] 67 / 2e-11 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 65 / 1e-10 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 63 / 4e-10 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029073 [exp] 805 / 0 AT3G19830 804 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10034197 [exp] 786 / 0 AT3G19830 813 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 82 / 5e-16 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 78 / 8e-15 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 74 / 1e-13 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 72 / 9e-13 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 71 / 1e-12 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 64 / 3e-10 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10005578 [exp] 64 / 4e-10 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013710 [exp] 64 / 4e-10 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G170300.1 pacid=42797827 polypeptide=Potri.010G170300.1.p locus=Potri.010G170300 ID=Potri.010G170300.1.v4.1 annot-version=v4.1 ATGACTCTGCAGTCTTCTTCTTCTTCAACTAACTTCAATTCCTATAAAATTCTCCCTCTCCTCTGCCCATGTAAATCCTCCAATCAAACCAACTACCACC CACCACTCCCTTTCTCCAAAAGAAGACGTAAAAAACTAATCACCAACTTCACTCAACAAAATCTCAGAAGAAGGTTTCTAACTTTCCATGCTTGTGTCAT CCCAAACGACACTCGAAATCGCAATGTAAACATTGAGCTTTCAAAGGGCACTAAGGGGTTTGTTTTGAAGCGAATTTCTAACGAATTGGAGACTGAAGAA TTATCTCAAGAGCATTCCATTTCCAACTTCACTGGCTTTCAAGAAGACCCAATCGTCGGCAAGTTAAGGACACAATTAGGAGTGATACACCCAATACCAT CGCCTCCAATTAATAGAAACATTGTTGGGTTATTTGTATTTTTCTTTTTTGTTGGTGTTGTTTTTGATAAAGCATGGAATTCAAGAAAGAAAGATAAAAG CAATGAGGAAGGAAAGCGTGGTGAGGCGTGGCCGCAAGTGCCCACCAGCTTTTCTTTGTTTCTGGAGAAGGATTTGCAGAGAAAAGAGTCTGTTGAATGG GTTAATATGGTGTTAGGGAAGTTGTGGAAGGTTTACAGAGGTGGGATTGAGAATTGGCTCATTGGGTTGTTGCAGCCTGTTATTGATAATTTGAAGAAGC CTGATTATGTTGAGAGAGTTGAAATTAAGCAGTTCTCTTTAGGGGATGAACCATTGTCTGTTAGGAATGTTGAGAGGAGAACTTCTCGCCGTGTCAACGA TTTGCAGTATCAAATAGGCCTCAGATATACTGGTGGTGCTCGGATGCTGCTAATGCTGTCGCTAAAATTTGGCATTATCCCCATTGTGGTGCCAGTTGGT GTTCGAGATTTTGATATTGATGGTGAACTTTGGGTCAAATTGCGGTTGATACCAACAGAGCCATGGGTGGGAGCTGTTTCATGGGCTTTTGTGTCACTCC CGAAGATCAAATTTGAACTTTCACCATTTCGTTTGTTCAATCTAATGGCAATTCCTGTTCTCTCAATGTTTCTGAAAAAACTTCTCACTGAGGATTTGCC TCGACTGTTTGTTCGTCCTAAGAAGATTGTTTTGGATTTTCAAAAAGGAAAAGCGGTTGGCCCTGTTGCAAATGAATCAGGAGAAATGCAAGAAGGAAAC AGGGATTTTGTTGGAGAACTATCAGTCACTCTTGTAGATGCCCGAAAACTTTCCTACGTCTTCCTTGGTAAAACAGACCCATATGTTATTCTGAACCTGG GAGATCAAATTATGCGCAGTAAAAAGAATAGTCAAACTACTGTCATTGGGCCTCCTGGTGAACCAATTTGGAATCAGGATTTTCACATGCTTGTTACAAA CCCCAGGAAACAAAAATTGAACATCCAAGTGAAAGACTCTCTTGGATTCACGGGTTTAACTATTGGCACAGGAGAGGTTGATTTGGGATCTTTGCAAGAT ACTGTACCAACTGACAAGATTGTGGTTCTGCGAGGAGGTTGGGGATTGTTCAGAAAAGCTTCTTCTGGAGAGATTCTCCTTCGACTAACTTATAAAGCCT ATGTTGAGGATGAAGATGATGATAAGAATGAGGTGGAGCATGTTGATACAGGTGCTTCAGATGATGAGATGTCTGATTCTGATGAATCAAATGCTATCTA TGAGCCTAGTAGAAGGGGTTCTTCAAATGAGATGGATAAAGAGTCATTTATGGATGTTCTAGCAGCTTTGATTGTGAGTGAGGAATTTCAAGGAATAGTG GCGTCTGAGACAGGAAATAACAAACTTTCCAATGATGCCTCAGGTGCAGGATCTGCTGGATCACGCTCACATACTCTTAATGCTGAATCAATGCCCTCAG ATAGCAATAACAGTTCTGAAGGTTCTGCTGGATCAATCTTAGTTTGGTTTGCGGTGATTACAAGTATATTAGTTCTAATTGCTGTCACTTTGGATGGTTC AAGTTTCTTCAACCCTTGA
AA sequence Show only first row Show all	>Potri.010G170300.1 pacid=42797827 polypeptide=Potri.010G170300.1.p locus=Potri.010G170300 ID=Potri.010G170300.1.v4.1 annot-version=v4.1 MTLQSSSSSTNFNSYKILPLLCPCKSSNQTNYHPPLPFSKRRRKKLITNFTQQNLRRRFLTFHACVIPNDTRNRNVNIELSKGTKGFVLKRISNELETEE LSQEHSISNFTGFQEDPIVGKLRTQLGVIHPIPSPPINRNIVGLFVFFFFVGVVFDKAWNSRKKDKSNEEGKRGEAWPQVPTSFSLFLEKDLQRKESVEW VNMVLGKLWKVYRGGIENWLIGLLQPVIDNLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVG VRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKIVLDFQKGKAVGPVANESGEMQEGN RDFVGELSVTLVDARKLSYVFLGKTDPYVILNLGDQIMRSKKNSQTTVIGPPGEPIWNQDFHMLVTNPRKQKLNIQVKDSLGFTGLTIGTGEVDLGSLQD TVPTDKIVVLRGGWGLFRKASSGEILLRLTYKAYVEDEDDDKNEVEHVDTGASDDEMSDSDESNAIYEPSRRGSSNEMDKESFMDVLAALIVSEEFQGIV ASETGNNKLSNDASGAGSAGSRSHTLNAESMPSDSNNSSEGSAGSILVWFAVITSILVLIAVTLDGSSFFNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.010G170300 [exp]	0	1
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Potri.006G049100 [exp]	4.89	0.9483
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	9.16	0.9434	PtrcGR1,Pt-GR.3
AT2G14910			unknown protein		Potri.009G092800 [exp]	11.61	0.9137
AT2G46915			Protein of unknown function (D...		Potri.002G183900 [exp]	11.74	0.9393
AT2G43235			unknown protein		Potri.007G124600 [exp]	13.03	0.9292
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	20.78	0.9374
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	27.54	0.9212
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	27.56	0.9370
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	28.39	0.9282
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	28.56	0.9370	CYP97C4

Compare expression of checked genes

Potri.010G170300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.