Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19840 632 / 0 ATPRP40C pre-mRNA-processing protein 40C (.1) AT3G19670 76 / 1e-13 ATPRP40B pre-mRNA-processing protein 40B (.1) AT1G44910 62 / 2e-09 ATPRP40A pre-mRNA-processing protein 40A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085150 [exp] 76 / 1e-16 ND / Potri.001G289800 [exp] 76 / 1e-13 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 61 / 5e-09 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.009G085400 [exp] 58 / 4e-08 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.006G032200 [exp] 45 / 0.0003 AT2G41020 410 / 2e-140 WW domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012908 [exp] 754 / 0 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10030562 [exp] 753 / 0 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10007723 [exp] 60 / 1e-08 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10018659 [exp] 59 / 2e-08 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10033770 [exp] 58 / 4e-08 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 56 / 2e-07 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10038992 [exp] 45 / 0.0002 AT2G41020 427 / 7e-147 WW domain-containing protein (.1.2) Lus10027285 [exp] 45 / 0.0003 AT2G41020 427 / 1e-146 WW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [poplar] [flax] WW PF00397 [poplar] [flax] WW WW domain CL0584 [poplar] [flax] FF PF01846 [poplar] [flax] FF FF domain
Representative CDS sequence Show only first row Show all	>Potri.010G170400.1 pacid=42798156 polypeptide=Potri.010G170400.1.p locus=Potri.010G170400 ID=Potri.010G170400.1.v4.1 annot-version=v4.1 ATGGAATCGCCAGCTTGGTTGCCGCAACGAGAAGTAAAGCCGCCGCCAACTGCCACAGAATCAGGAGTTGCAGCAGCTACCCCTCCACCGGAGAATTCAG CTGGTAATAATGCACACAGTAGCTATTCATCTCCGGCTCCGACATTTACTTACAACGTGACTCCTAATATGTCTTCCGGTGCGGCTTTGAATTCTAATCC ACCGGGACAGCCCGTACCTGTTCCTGGCCCGGCTTCATCCGTTGGTCTTTCCTTTTCATATAAAATTCCTCAAACCGGGCCTGGTTTTCCTGGCAATCAA CAGTTACAATCCAGTGTTGACAAATCACCTGCAATTGCCCAAGGCAGTGCACCATCAGTGGCACCAATTGCATCCCAGTCTGCTTCATTTCCCCTTCATT CTCCTTCAAGTTCTTACACATCTTTATCTTCTAACCTGGGCCCGACACCTTCACAGACACCAGCTACTGCTTCTTTTTACTTGCCCCCTGGATTGCCCAG AACTCCTGGCACACTTGCCCCCCAAGGATTGGTACCATCTGCACCAATGACCCAGCCATCTGTAGCTGCTGATTCTTTACCTCTAGGAGTTCAGAGACCC ATCATGCCTACGATGCCCTCTTCAAATGCAGTTCAGCAGCAAACTTACCCAACCTACCCATCTTTACCTGTCATGGCTGCTTCCCCACAGGCTCTCTGGA TGCATCCCCCACCCATAGGAGGCATGCCTAGGCAACCATTTTTGTCATATCCTGCTGCTTTTCCTGGATCCTTTCCTCCACCTGGACATGGCATGCCATA TCCTTCTGTTTCGTTGCCTGATTCTCAACCCCCTGGGGTTGTTCCTGTTGGACATTCATATGCTATTCCCATGTCTTCTTCTGCTTCAGTTCATCAGTTA CCTGGTGCTCCAGGGATGCAGACAGAATTACCTCCTCCTGGAATTGATAACCACAACCATCTCCATCACAGTGGCATCAGGGACAATGCAGCTGTTAGCG AACCATCACATGCGTGGACTGCACACAAGACTGACACAGGAGTGTTTTACTATTATAATGCTGTAACTGGAGTATCAACTTATGAGAAACCACCTGGGTT TAAGGAGCCTGAGAAGGTTCCTGTGCAACCAACTCCAGTTTCAATGGAGAATTTGGCCGGCACAGATTGGGTGTTGATCACAACAAATGATAGCAAAAAA TATTACTACAACAACAAAACTAAGTTAAGCAGCTGGCAGATTCCTAGTGAGGTGACAGAATTGAGAAAGAACCAGGAAGCTGAAGTATCAAAAGGAAATG CGATGTCAGTGTCACAAGTTAATGCTTTGACTGAAAAAGGATCTGCTCCAATTAGTTTGAGTGCCCCTGCTGCTAATACTGGTGGTCGTGATGCCACGGC TCTTAGAGTTTTAAGTGTGCCGGGAACCTCATCTGCTCTGGATTTGATAAAAAAAAAGCTGCAAGAATTCGGAGCTCCAGCCATTTCTGCTGCTGTTTCA GTTTCATCAGGAGCAGCAGCATCAGAATCAAATGGCTCAAGAGTAGTTGAAGCTGCAGCTAAGGGCTTGCCAAGTGAGATTAGCAAAGATAAACTGAAGG ATGCTAATGGGGATGGTAATATATCTGATTCCTCTACGGACTCTGAGGATGAAGATGACGGGCCATCAAAGGAGGAATGCATTATCCAGTTTAAGGAGAT GCTTAAGGAACGTGGAGTGGCACCATTCTCAAAATGGGAGAAGGAGCTGCCGAAGTTAGTGTTTGATCCGCGTTTTAAGGCTATTCCAAGCCATTCTGCA AGAAGATCTTTGTTTGAACACTATGTTAAAACACGTGCTGAGGAGAAACGCAAGGAAAAGCGAGCAGCTCAGAAGGCTGCAGTGGAGGGATTCAAGCAGT TGCTGGAGGAAGCATCAGAGGACATTGATCACAACACTGATTATCAAACTTTCAGAAAGAAATGGGGCAATGATCCAAGGTTCGAAGCCTTGGACCGCAA AGATCGAGAGCATTTATTAAATGAAAGGATTCATCTTTTGAAGAAGGCAGCACAGGAAAAGGCTCAAGCTGAACGTGCTTATGCTGCTGCCAGTTTCAAG TCTATGCTTCGAGATAAAGGAGACATAACTGTTAGTTCACGTTGGTCCAGGGTCAAGGATAGTCTAAGGAATGACCCCAGATACAAATCTGTAAAGCATG AGGATAGAGAGGTTTTCTTCAATGAGTATCTGTATGAATTAAAAGCTGCAGAGGAAGCAGAGCGAGATGCAAGAGGCAAAACAGAGGAGCAGCTCCTTTC CAGCTCAGTTCAGGACAAGCTGAAGGAGAGGGAGCGAGAGTTGCGAAAACGGAAGGAACGAGAAGAACAAGAAATGGAAAGGGTGCGTGTGAAAGTTCGG AGGAAAGAAGCAGTTGCATCTTTTCAAGCTTTGCTTGTGGAAACACTCAAGGACCCTCAGGCATCTTGGACTGAGTCGAAACCAAAGTTGGATAAGGATC CACAAAGACGTGCAACACATCCTGATTTAGATCCATCTGATACAGAGAAGCTCTTCCGGGAGCACATGAAGATGCTGCATGAGCGATGTACAAATGATTT CAAAGCTTTGTTAGCTGAAGTTATAACTGCTGAAACAGCAGCCCAGAAGACAGATGATGGGAAAACAGTCCTTGATTCATGGTCAACAGCTAAACGACTT ATAAAGCCTGATCCTAGGTATAACAAGATGCCTCGAAAAGAGAGGGAAACTTTGTGGCGTCGATATGCCGAGGAGATGTTGAGAAAGCAAAAGTTTGAAC CAGATCCGAAGGAAGATAAGCACACGGATTCAAAAAATAGAAGCGCTAATGATTCTGGAAGATACCACTCAGGATCGAGGAGAACAAATGACCGAAGATA A
AA sequence Show only first row Show all	>Potri.010G170400.1 pacid=42798156 polypeptide=Potri.010G170400.1.p locus=Potri.010G170400 ID=Potri.010G170400.1.v4.1 annot-version=v4.1 MESPAWLPQREVKPPPTATESGVAAATPPPENSAGNNAHSSYSSPAPTFTYNVTPNMSSGAALNSNPPGQPVPVPGPASSVGLSFSYKIPQTGPGFPGNQ QLQSSVDKSPAIAQGSAPSVAPIASQSASFPLHSPSSSYTSLSSNLGPTPSQTPATASFYLPPGLPRTPGTLAPQGLVPSAPMTQPSVAADSLPLGVQRP IMPTMPSSNAVQQQTYPTYPSLPVMAASPQALWMHPPPIGGMPRQPFLSYPAAFPGSFPPPGHGMPYPSVSLPDSQPPGVVPVGHSYAIPMSSSASVHQL PGAPGMQTELPPPGIDNHNHLHHSGIRDNAAVSEPSHAWTAHKTDTGVFYYYNAVTGVSTYEKPPGFKEPEKVPVQPTPVSMENLAGTDWVLITTNDSKK YYYNNKTKLSSWQIPSEVTELRKNQEAEVSKGNAMSVSQVNALTEKGSAPISLSAPAANTGGRDATALRVLSVPGTSSALDLIKKKLQEFGAPAISAAVS VSSGAAASESNGSRVVEAAAKGLPSEISKDKLKDANGDGNISDSSTDSEDEDDGPSKEECIIQFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSA RRSLFEHYVKTRAEEKRKEKRAAQKAAVEGFKQLLEEASEDIDHNTDYQTFRKKWGNDPRFEALDRKDREHLLNERIHLLKKAAQEKAQAERAYAAASFK SMLRDKGDITVSSRWSRVKDSLRNDPRYKSVKHEDREVFFNEYLYELKAAEEAERDARGKTEEQLLSSSVQDKLKERERELRKRKEREEQEMERVRVKVR RKEAVASFQALLVETLKDPQASWTESKPKLDKDPQRRATHPDLDPSDTEKLFREHMKMLHERCTNDFKALLAEVITAETAAQKTDDGKTVLDSWSTAKRL IKPDPRYNKMPRKERETLWRRYAEEMLRKQKFEPDPKEDKHTDSKNRSANDSGRYHSGSRRTNDRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	0	1
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	3.31	0.8963
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	6.00	0.8882
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	6.00	0.8819
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	6.32	0.8936	Pt-RPB1.1
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	6.32	0.8839
AT4G03090			sequence-specific DNA binding;...		Potri.014G135700 [exp]	6.78	0.8573
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	6.92	0.8367
AT1G72390			unknown protein		Potri.001G165800 [exp]	7.34	0.8932
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	7.93	0.8596
AT3G22380		TIC	time for coffee (.1.2)		Potri.008G151200 [exp]	8.66	0.8689

Compare expression of checked genes

Potri.010G170400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.