Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50300 320 / 4e-107 TAF15 TBP-associated factor 15 (.1) AT5G58470 59 / 2e-09 TAF15b TBP-associated factor 15B (.1.2) AT5G16260 52 / 5e-07 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 51 / 1e-06 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G67325 44 / 7e-05 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT3G54230 43 / 0.0003 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085400 [exp] 417 / 2e-145 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.001G281300 [exp] 59 / 2e-09 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.008G078200 [exp] 56 / 2e-08 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G076600 [exp] 54 / 1e-07 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.010G179000 [exp] 52 / 6e-07 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G227500 [exp] 46 / 2e-05 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.010G203200 [exp] 45 / 5e-05 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.003G218600 [exp] 44 / 0.0001 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.003G149600 [exp] 44 / 0.0002 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012902 [exp] 362 / 3e-123 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 350 / 5e-118 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10042268 [exp] 60 / 1e-09 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10026388 [exp] 59 / 2e-09 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10040636 [exp] 49 / 4e-06 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10018277 [exp] 46 / 4e-05 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10037960 [exp] 43 / 0.0002 AT3G10400 240 / 2e-79 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10037029 [exp] 43 / 0.0002 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10038693 [exp] 43 / 0.0002 AT3G10400 244 / 6e-81 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10026858 [exp] 44 / 0.0003 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.010G170700.3 pacid=42797905 polypeptide=Potri.010G170700.3.p locus=Potri.010G170700 ID=Potri.010G170700.3.v4.1 annot-version=v4.1 ATGGCAAGCTATACAGGTAAAGGAGCCCCTTCTAATGGGACAATATATGTTAGTAATTTACCTGAAGGGACTGATGATTCTATGTTGGCTGAACATTTTG GCACTATTGGGTTGTTAAAGAAAGACAAGCGAACTGGTCGGCCTAAGATATGGCTGTACCGTGACAAAATGACAAATGAGCCGAAGGGTGACGCTACAGT TACTTATGAGGACCCTCATGCTGCTCTAGCTGCTGTTGAGTGGTTCAACAACAAGGATTTTCATGGTAATACAATTGGAGTATTTATAGCACAGTCTAAG AGCAAAGATGACCAGGCGTTTAACCCTGTGGATGATCCAAATGATTCTGGCGTTCTTGAGGAAAATGCCAAGGATTTGAATGAGGGCGGGGGAAGAGGTA GAGGACGGGGTGATGCTTCAGGGAAAGCATGGCAACAGGAGGGAGACTGGTTGTGTCCGAATACAAGCAGTTGTTCCAATGTAAATTTTGCATTTCGTGG TGTGTGCAACCTCTGTGGAAGTGCTCGACCTTCTGGTCCATCTGGCGGTGCTGCTGGAGGTGGTGGTCGTGGGAGGGGCCGTGGTGCCAATGACTCTGGG GCCCATGGCCGGTCAGTTGGTGCCCCTACTGGACTTTTTGGCCCAAATGACTGGCCTTGTCCAATGTGTGGCAATATCAACTGGGCAAAACGCATGAAGT GCAATATTTGCAACACCAATAAACCCGGTCACAATGAGGCTGGTGTGAGAGGAGGACGAGCTGGTGGTTATAAAGAACTCGATGAAGAAGAATTAGAGGA AACTAAGCGACGACGAAAAGAAGCTGAAGAAGATGATGGAGAGTTGTATGATGAGTTTGGAAATTTGAAGAAAAAATTTCGGGCCAAAACTCAACAAGCT GAAGCTGGCAGGGTGCTTCTGGGTGCTGGGCGTGCAGGTTGGGAGGTTGAGGAATTAGGTGCTGTTGATAAACACGGGAGAGAGAGGAGCAGAGAAAGAG GGAGGGATCAGGATGATAGGGAAAGCAGCAAGACTCGGGAGCATGATGAGAGGGACAGGCGCCTTAGTCGAAGTAGGGAGAGGGATCGAGGAAGAGATCG AGATCGAGATTATGAGTATGGTCGAGACAGAGAATATGGGCGGGACCGGCACCGGCACCGATACTGA
AA sequence Show only first row Show all	>Potri.010G170700.3 pacid=42797905 polypeptide=Potri.010G170700.3.p locus=Potri.010G170700 ID=Potri.010G170700.3.v4.1 annot-version=v4.1 MASYTGKGAPSNGTIYVSNLPEGTDDSMLAEHFGTIGLLKKDKRTGRPKIWLYRDKMTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFIAQSK SKDDQAFNPVDDPNDSGVLEENAKDLNEGGGRGRGRGDASGKAWQQEGDWLCPNTSSCSNVNFAFRGVCNLCGSARPSGPSGGAAGGGGRGRGRGANDSG AHGRSVGAPTGLFGPNDWPCPMCGNINWAKRMKCNICNTNKPGHNEAGVRGGRAGGYKELDEEELEETKRRRKEAEEDDGELYDEFGNLKKKFRAKTQQA EAGRVLLGAGRAGWEVEELGAVDKHGRERSRERGRDQDDRESSKTREHDERDRRLSRSRERDRGRDRDRDYEYGRDREYGRDRHRHRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.010G170700 [exp]	0	1
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	7.74	0.8093
AT5G13760			Plasma-membrane choline transp...		Potri.009G056301 [exp]	10.00	0.7823
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	11.74	0.7182
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.005G110500 [exp]	19.07	0.6773
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Potri.018G110600 [exp]	31.12	0.7623
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	32.55	0.7565
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	36.27	0.7686
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.002G003000 [exp]	37.41	0.6825
AT4G18230			unknown protein		Potri.002G170700 [exp]	39.79	0.7966
AT1G52320			unknown protein		Potri.001G181100 [exp]	44.58	0.7174

Compare expression of checked genes

Potri.010G170700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.