Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01550 69 / 6e-13 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) AT2G46080 62 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085600 [exp] 309 / 8e-104 AT2G46080 52 / 3e-07 unknown protein Potri.014G088600 [exp] 74 / 3e-14 AT2G46080 431 / 1e-151 unknown protein Potri.002G162600 [exp] 70 / 3e-13 AT2G46080 456 / 7e-162 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036385 [exp] 88 / 4e-19 AT2G46080 434 / 4e-153 unknown protein Lus10005122 [exp] 86 / 1e-18 AT2G46080 432 / 1e-152 unknown protein Lus10018821 [exp] 84 / 6e-18 AT2G46080 431 / 5e-152 unknown protein Lus10007920 [exp] 83 / 2e-17 AT2G46080 433 / 8e-153 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05633 [poplar] [flax] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Potri.010G171000.1 pacid=42799568 polypeptide=Potri.010G171000.1.p locus=Potri.010G171000 ID=Potri.010G171000.1.v4.1 annot-version=v4.1 ATGTTTCTAACAGAGACTTCCATTTTCCCTTCCTTCTTCGATCCGTTTAACAATACGAAGAAGAAGAACAAGAAAGATGCAGCCCATATGAAATTCGACC TTTTCTCTCACTCCTTCGACGAATCCCTTCTTCGTCGTCTCAAAACTTTAACCAATTCCTCCTCCTCATCTCCACCGTCCGTTGCAATAAATCTCTCCTG GCTTTCCTCAGCCCTTGATTTTCTCTCCTACACACATAACGAAGCCATAAATCTACTTTCTTCTCTCAAGCTCGATAATTCTTTGGATTTTTACCTGGAT AACAGTGTCAGGCTCCTCGATCTCTGCAACTCGATCAGTTCAGAGATCGAACGCTTCCGCCATCGCCGACTTGTCCTCAGTTTTGCACTTCACGTTCTTA ACAACGGCAGTGAAGATCAAGAGAAGCTGACAAGAGCTAGGGTTTCATTATCTGATTGGGTAAATAATTACAAAGGACCCATATTTGATAGCAACAACAA TTTGGAGAATTTAGCGAGAGATTTGGCATTGAGGCTTAAGGAGGTTCCACGTGGAAAGATCTCAGCCGATGAAAGGCTAGTTCGCCGTACGATCTTCGCC GTTGGGTTAGTAACGGTATTCGTTGCTGGAGTTGTGGTCACGGCGTTACGTGGATCCACGGGCTTAGTTGTTGCCGTTAGAGCGCCGCCTGAGTTTTTGT GGGCCGACTCGTTCAATTTTCTCAACACAATGATTTCAAATAGGCCAGACAAAAAGAGGTATCTACTCAACGAGCTTGATGAGATGGAGGCGCGTATTAA GGAAGTGAGTGGCGTCATGGTCGACGGTAGCGGAGAGAACGGGGAAAGGTCAAGCAGTGCCGTTAAGGAGCTGGAGATGGTGACGGAGAGGTTAGGAGGG GGATTGGATAGGTTGGGTAACGGCGTGAATGAAGTATTCAATTCGGTTTTGAGTACTAGAAAGGGGATGCTGGAGAAAATGAGAGTGGGTCCACCACAGG AGAAACGAAGCGATGCTAAAAAGGTTACAAGTAACCTATACACTAAGCGTGTACTGGATAATGTGTCTCCTGGTGTTTCTAGAATAGTTTAA
AA sequence Show only first row Show all	>Potri.010G171000.1 pacid=42799568 polypeptide=Potri.010G171000.1.p locus=Potri.010G171000 ID=Potri.010G171000.1.v4.1 annot-version=v4.1 MFLTETSIFPSFFDPFNNTKKKNKKDAAHMKFDLFSHSFDESLLRRLKTLTNSSSSSPPSVAINLSWLSSALDFLSYTHNEAINLLSSLKLDNSLDFYLD NSVRLLDLCNSISSEIERFRHRRLVLSFALHVLNNGSEDQEKLTRARVSLSDWVNNYKGPIFDSNNNLENLARDLALRLKEVPRGKISADERLVRRTIFA VGLVTVFVAGVVVTALRGSTGLVVAVRAPPEFLWADSFNFLNTMISNRPDKKRYLLNELDEMEARIKEVSGVMVDGSGENGERSSSAVKELEMVTERLGG GLDRLGNGVNEVFNSVLSTRKGMLEKMRVGPPQEKRSDAKKVTSNLYTKRVLDNVSPGVSRIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Potri.010G171000 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.007G134000 [exp]	1.00	0.9004
AT4G20880			ethylene-responsive nuclear pr...		Potri.001G464300 [exp]	4.47	0.8863
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.007G048101 [exp]	4.69	0.8986
AT4G27280			Calcium-binding EF-hand family...		Potri.001G412077 [exp]	5.91	0.8733
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.001G243300 [exp]	6.00	0.8867
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.007G138100 [exp]	7.34	0.8748
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163500 [exp]	10.00	0.8666
AT3G03280			unknown protein		Potri.010G116000 [exp]	10.24	0.8055
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.008G192600 [exp]	11.22	0.8670
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163700 [exp]	15.42	0.8490

Compare expression of checked genes

Potri.010G171000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.