Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19895 701 / 0 RING/U-box superfamily protein (.1) AT3G12940 152 / 7e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G40640 142 / 4e-37 RING/U-box superfamily protein (.1.2.3) AT5G05230 139 / 2e-36 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085700 [exp] 997 / 0 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.011G143000 [exp] 162 / 1e-43 AT3G12940 779 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.019G058300 [exp] 159 / 1e-42 AT5G05230 285 / 1e-92 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034201 [exp] 749 / 0 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 381 / 9e-130 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1) Lus10029068 [exp] 181 / 2e-53 AT3G19895 164 / 7e-48 RING/U-box superfamily protein (.1) Lus10002543 [exp] 149 / 2e-38 AT3G12940 716 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034237 [exp] 143 / 3e-37 AT5G05230 229 / 2e-71 RING/U-box superfamily protein (.1) Lus10029029 [exp] 142 / 1e-36 AT5G05230 197 / 2e-59 RING/U-box superfamily protein (.1) Lus10027382 [exp] 99 / 1e-21 AT3G12940 493 / 6e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G171100.6 pacid=42799564 polypeptide=Potri.010G171100.6.p locus=Potri.010G171100 ID=Potri.010G171100.6.v4.1 annot-version=v4.1 ATGGTTTTGGTGATGATCCAACATCAGCACCAGCAAACCTCTACTACGGTAGCACCACACCCAATCCCTCTCTCCACCTCCACCCATAGATCCCCGGCTA CACCCTCCCACACTCAATCCCAATCCCCCCTTTCTCTGGTCCCACTCTCCTCCTCCTCTCACCGCTTCCCCCCTCCTCCTCCTCCTCCTCCACCACCACC ACCACCTTCCCTCGATCATGTAATTTCCCCGATCGCATCCGCGGCCCACCACTCCGCCGAGCCAGCCCTCATGTTGGCTACGGTTCGTCTCTCCGATATC TCTCCCTACGATGGGGCTCCTGGTGGGCCCTACGTGCGAGCGGTTGAGGCGTTATCGGGGTCATTAATGAAGCATAACGCCGCGGTTATTGAATTGGGGA GTGCAGAAGCCTCCCTTATGCGGTGTGGCCTCGAGGCCGCAAGGTTGTATTTTAGGAGTAGATCTCAAAACGGTGTCGTTAAAGGTTGTAGCAGCCGCGG AGTTTACATGTACAGGGCTGGAAGGCCAGTTGAAGATTGTGATTCGTCTCCGCCGTGTATGGCTGAAATATTTAGGTGTATGGGAAAGGCAGCGCGTTCT GCTTTATGTGCAATAGCAAGACATCTTCGTTTAAGGAGCGACGTTTTCAATCAATTACTTGATGATACGCCATTGCCTGCTGGCGAGGTGTCTTCTTCGG TGCTTGTTGCCACTTATTCTCATACTTCTTTACAAAATGGAAAAGGGGCTATTGGAGGAGGGAAGATGGCAGTTAATGGGGAAGTTGAAAAGGGACTGTT GACTTTGATTTCCTCGGACAGTCCTGGTCTGCAGGTTTGTGACCCCAATGGTCACTGGTACTTGGCTGATTGTAGTTCAGCTCCAGGGAATCTTTTACTC ATTACTGGCAAGACACTTAGCCACACTACTGCTGGACTTCGTCCTGCTGCCTCGTATAGAGCTGCTCCTGATTACTCATCGGGTGCTAACAGTGGTGGCA GGACTTCACTGGCATTTAGACTCATGCCACAGGGCAATGCCATTTTAGATTGTTCTCCTATTGCAGCAGCTGGTCATGTTATTCCCCAGAGCTATGTGCC AATATCTGTGAGTCAGTTTTTGGATGACCTTTCCGCTGAGGAGGATGTAAATTGCAATCGACCTGATAATACTTATGTTGCTCAAAATGATGTGAATAAG GAGCTATCATTAAGAAGTGTTCTCTCAGATCCCCTATCAGGTGCATTTCTTGAGGATGCCGTGGTTGTTTCCTGTGGACATTCATTTGGTGGTCTCATGC TGAGAAGAGTCCTTGACATGTCAAGATGTACACTTTGCAATGCAGAAATTGAGGCTGGATCTTTGGTTCCTAATTATGCTCTTAGAGCTGCTGCTGCAGC TGTAAAGAATGAAGATGATCGAAGGCTATTTTATAATGCAACTCTGCGGAAGCGTCGCAAAGAAATGGGTGATCACACAGATTCCATGAAGAGACAACAC AGGGAGAATGTAGATATTGCTGCTGCTGATGGCTTGCATAGAGGAGTGCAGTATCCTTTTTCTGTAAATGAGAAAGTAATGATTAAGGGAAATAGGAGGA CACCAGAAAAATTTGTTGGAAAGGAAGCAATCATCACTTCACAGTGTCTGAATGGCTGGTACTTGCTTAAGATTATTGGCAGTGGTGAGAATGTTCGTCT ACAGTATCGCTCTCTTAGAAAAATTTTGAGCTCTGAAGCCATTGAAGACAGATGTGCTTCACAACCGATTCAAAACAGCAGCTAA
AA sequence Show only first row Show all	>Potri.010G171100.6 pacid=42799564 polypeptide=Potri.010G171100.6.p locus=Potri.010G171100 ID=Potri.010G171100.6.v4.1 annot-version=v4.1 MVLVMIQHQHQQTSTTVAPHPIPLSTSTHRSPATPSHTQSQSPLSLVPLSSSSHRFPPPPPPPPPPPPPSLDHVISPIASAAHHSAEPALMLATVRLSDI SPYDGAPGGPYVRAVEALSGSLMKHNAAVIELGSAEASLMRCGLEAARLYFRSRSQNGVVKGCSSRGVYMYRAGRPVEDCDSSPPCMAEIFRCMGKAARS ALCAIARHLRLRSDVFNQLLDDTPLPAGEVSSSVLVATYSHTSLQNGKGAIGGGKMAVNGEVEKGLLTLISSDSPGLQVCDPNGHWYLADCSSAPGNLLL ITGKTLSHTTAGLRPAASYRAAPDYSSGANSGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFLDDLSAEEDVNCNRPDNTYVAQNDVNK ELSLRSVLSDPLSGAFLEDAVVVSCGHSFGGLMLRRVLDMSRCTLCNAEIEAGSLVPNYALRAAAAAVKNEDDRRLFYNATLRKRRKEMGDHTDSMKRQH RENVDIAAADGLHRGVQYPFSVNEKVMIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGSGENVRLQYRSLRKILSSEAIEDRCASQPIQNSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	0	1
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	2.00	0.9097	Pt-TAFII58.1
AT5G62030			diphthamide synthesis DPH2 fam...		Potri.019G041300 [exp]	2.44	0.8963
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	4.47	0.8769
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.005G094600 [exp]	4.47	0.8775
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	7.21	0.8436
AT3G32940			RNA-binding KH domain-containi...		Potri.003G216800 [exp]	7.34	0.8493
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086700 [exp]	7.34	0.8733
AT5G41770			crooked neck protein, putative...		Potri.003G137200 [exp]	10.95	0.8365
AT3G26850			histone-lysine N-methyltransfe...		Potri.018G051900 [exp]	13.41	0.8545
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	14.07	0.8464

Compare expression of checked genes

Potri.010G171100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.