Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 360 / 4e-112 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44900 342 / 2e-105 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 337 / 1e-103 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44930 312 / 2e-94 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08140 303 / 7e-91 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08150 299 / 2e-89 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT5G22910 297 / 8e-89 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT2G28180 298 / 1e-88 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT3G44910 284 / 4e-84 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT1G08135 278 / 1e-81 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099000 [exp] 922 / 0 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G182900 [exp] 860 / 0 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 358 / 5e-112 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 344 / 2e-106 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 341 / 6e-105 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 333 / 2e-102 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 327 / 3e-100 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.019G123700 [exp] 313 / 2e-94 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 310 / 7e-94 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013423 [exp] 672 / 0 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 642 / 0 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 609 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040961 [exp] 429 / 3e-143 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000154 [exp] 358 / 5e-117 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 335 / 5e-103 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 332 / 6e-102 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10030013 [exp] 331 / 8e-101 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 330 / 4e-100 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 304 / 3e-91 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.010G171200.1 pacid=42798756 polypeptide=Potri.010G171200.1.p locus=Potri.010G171200 ID=Potri.010G171200.1.v4.1 annot-version=v4.1 ATGGACACCCCAGAAGACATCGTGAATGTAAGTGGAAAATGCTACGAGAATGTTAAAGTATTCTCGGAAGGATTGTGGAGTGTAAAACCTGGAGAAAGTA TTCTACAACATTCATTGGTTCGTTTCCATTTTGAGTTACTTGCGATGTTCTTCCTCGCCGGTTCATTTCACTTTTTCCTCAAACGATTTCATTTTTCACG TTTCACCTCGGATGTCCTGGCAGGTATAGCAGTGGGACCGACTGTAATGGGATATTACTTTGGCAGGACATCAGATGACTTGTTCCATACAAGCATTCCC AATCAAGTCGTTAGTTCATTATCAAAGATTGGTTACATTCTCTTCGTTTTCTTTGCTGGAGTACAAATGGACACGACCTTGATATGGAAAACAGGAAGAA AAGCTTTTTCTTTAGGGGCGTTCATCTTTGCAACCAATTTCATAATGGCAAGTTCTATTGCTATCTTTTTCCCCAAAGATAATGGCTTAATTATCGGAAT CAAGGGTGGAATGATTTTCACTGGGAATATGTATTTTGAATCAATGACCCAGACCGAATTCGTTGGAGTCTGTTACATTTTAATGCAGCTTCAGATTATA AATTCACAGCTCGGACGCCTTGCTCTAGCATCATCAATGCATTATAAGTTGATGAGCCTGGTATATAATATTACGAATGGTTTTGGAAGGGGTTTTAGAA CTACATCGATTCGTGTTGGAGTTCAGATGGTTATTTTTTCCTTGGCATACATTTTGTTTATTGTGATCATCTTGAGGCAGATGATATTCACGTTCATTAG AATAACACCGCAAGGTCAGCCTTTGAAGGAAATTTATGCTACCATTACCATGGCCTGCGTGTTTCTTTTAGCATCAAGTGGTGATTGTGTAGGGCTAAAT TATGTGTTTGGCCCTTTAATACTTGGCTTGATAGTGCCTGCAAGGTCTCCATTAGCTGAAATCCTGGTACAAAAGTTTAATACGGCTGCTTCAGGATTTC TTCTCCCACTCATGACAATGTTCTGTGCCTCCAAAATTGATTTACATCAATTCATCTCGGAATTCAACACTCTGGTCGCCTTCAAGATCTCATTGATTGG ATTCGCAATTAAGGTGGCGGTAACTTTTCTAGCGGTGTACTTTTACAAGTTACCTTTAAGACATGCTGCTGCGCTTACAGTCATCTTGAATGCCAAAGGC CATTTCGAGGTGGGAACTTTTATCAGCTTCAATCCACTTAAGGAAATTCAAAGTACCAGTGGGATTTTGTTACTATTTCTGTTACAAGCCTTTCAACCAC TTCTTGTCAAGACTCTCTACCATCCTGCAGAGCACTACGTAAGCTACAAGCAAAAATCGATCGAGCAAGTTTCAAATGATGCAGAGCTCCAGATACTGGT ATGTGCGCATAGAGAGGAAGACGTCATGGCAGCAATAACACTCCTAGAATATTCTAATCCAACAAAACAGAATCCCTTGTCCATTTATGGACTCTGCCTG GAGGAACTTGTTAGCAGCTTTATCCCTGTTCTAATCAACCACCAATTAGGACAAAAAATCTCTTATTCTGAGGGATCCCGCTCGCAACCCATCATTGACA TCTTCAAGTACTTCAAGACGCAACACAACAAGTTCGTCCAGATGCATGTGTTCACTGCAATATCACCATTTAAACAGATGCACGAAGACATTTGCTGGCT GTCTTTCGACAAGGATTGTTCCCTAGTAATAATTCCATTTCATAAGAAATGGAATAGCAAAGGCAAAATGGTTTCAAGCAATACTGATTTGAGGAATTTG AACATCAACGTATTGAAAAATGCCCCTTGTTCTGTAGGAACCCTCATTGATCGTAAAAGAGCACAGGGGTTGTCTTCTATTTTTTCTACGTCAGCAACTT ACCGTGTGGCCGCCCTGTTCGTTGGAGGCTCAGATGACAGGGAGGCAATATCTTATGCCTTAAGGATGGCAAGAAGCCCCAGAGTTCATCTAACAATCAT GCATCTCGTTGCACACAATGACGATGTCCATAATTGGGAGAATATGGTCAATGATGACTTTTTAAGAAAAGTGAAAGCAGAAATGTCAGGGCATAAGAAC ATCGATTACATGGAGGAGACAGTGAGAGATGGATCTGATACATCTGAGGTACTTCAATCAATTGTAGAGGATCGTGACCTTATCATGGTAGGGCGTCAAC ATGAAAATGAGCCTCAAGCTTTAGCAGGCCTATCTGCAGAATGGATTGATTTTCCAGAGCTTGGGCCAATGGGGGACCTGCTTGCATCTGAATATATTTC TAATCCAGTTTCAGTTTTGGTGGTTCAACAACAAAAGAAGAAAGTAAATGTTACAGCTTCAAATTAA
AA sequence Show only first row Show all	>Potri.010G171200.1 pacid=42798756 polypeptide=Potri.010G171200.1.p locus=Potri.010G171200 ID=Potri.010G171200.1.v4.1 annot-version=v4.1 MDTPEDIVNVSGKCYENVKVFSEGLWSVKPGESILQHSLVRFHFELLAMFFLAGSFHFFLKRFHFSRFTSDVLAGIAVGPTVMGYYFGRTSDDLFHTSIP NQVVSSLSKIGYILFVFFAGVQMDTTLIWKTGRKAFSLGAFIFATNFIMASSIAIFFPKDNGLIIGIKGGMIFTGNMYFESMTQTEFVGVCYILMQLQII NSQLGRLALASSMHYKLMSLVYNITNGFGRGFRTTSIRVGVQMVIFSLAYILFIVIILRQMIFTFIRITPQGQPLKEIYATITMACVFLLASSGDCVGLN YVFGPLILGLIVPARSPLAEILVQKFNTAASGFLLPLMTMFCASKIDLHQFISEFNTLVAFKISLIGFAIKVAVTFLAVYFYKLPLRHAAALTVILNAKG HFEVGTFISFNPLKEIQSTSGILLLFLLQAFQPLLVKTLYHPAEHYVSYKQKSIEQVSNDAELQILVCAHREEDVMAAITLLEYSNPTKQNPLSIYGLCL EELVSSFIPVLINHQLGQKISYSEGSRSQPIIDIFKYFKTQHNKFVQMHVFTAISPFKQMHEDICWLSFDKDCSLVIIPFHKKWNSKGKMVSSNTDLRNL NINVLKNAPCSVGTLIDRKRAQGLSSIFSTSATYRVAALFVGGSDDREAISYALRMARSPRVHLTIMHLVAHNDDVHNWENMVNDDFLRKVKAEMSGHKN IDYMEETVRDGSDTSEVLQSIVEDRDLIMVGRQHENEPQALAGLSAEWIDFPELGPMGDLLASEYISNPVSVLVVQQQKKKVNVTASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G171200 [exp]	0	1
					Potri.001G422000 [exp]	7.21	0.7194
					Potri.003G214400 [exp]	41.18	0.6284
					Potri.001G302801 [exp]	51.61	0.6271
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.001G264600 [exp]	63.87	0.5925
					Potri.014G039466 [exp]	269.99	0.5072

Compare expression of checked genes

Potri.010G171200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.