Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56180 500 / 8e-178 unknown protein AT5G27290 84 / 1e-17 unknown protein AT2G21960 82 / 5e-17 unknown protein AT1G54680 50 / 8e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084400 [exp] 81 / 1e-16 AT2G21960 449 / 8e-160 unknown protein Potri.013G029000 [exp] 79 / 3e-16 AT5G27290 451 / 5e-160 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006532 [exp] 476 / 2e-168 AT1G56180 510 / 0.0 unknown protein Lus10005779 [exp] 86 / 3e-18 AT2G21960 465 / 6e-166 unknown protein Lus10033822 [exp] 75 / 1e-14 AT5G27290 494 / 3e-177 unknown protein Lus10018966 [exp] 61 / 5e-10 AT5G27290 479 / 8e-171 unknown protein Lus10006822 [exp] 47 / 1e-05 AT2G21960 248 / 1e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G171400.1 pacid=42797934 polypeptide=Potri.010G171400.1.p locus=Potri.010G171400 ID=Potri.010G171400.1.v4.1 annot-version=v4.1 ATGGCTTTCTCGTCCCAACAACTATTATTTTCTAGCCAATTTTCCCTTCCTTGCCCCCGAACACCACCAAATAGAAATCTCAAAGCCATCCCAAGAGCAG CTCTAAGAGAATGGAAAGAGTACGAGGATGCTGTGAAAAGAAAAGACCTTGCCAGAGCTCTTAGGTTCTTGAAATCCAAAGAAACTCAGACAAACAATGA TAGTTTAGCTGATTCAGTTAACGGGTCTTTCTCAAATGACTCAGCGACTCGGTCTGGACTCGGTGACCTGGGTTTGTTTGATGTGTTAGAGAGGGATTGG GAGGTTTTGGACACTTGTTTGAATGCTGATGATATGAGACTCGTTTCCAGTGCGTACGGGTTCCTCAAGAACAGGGGGTTCTTGCCCAGTTTTGGAAAAT TTAGCAACATTGTTTTGGAAGGACCTAGGGAAGTTACACCAATCTTGTTGCAGTCTTCTACTGGTCTAGAAGTGACAAAACTTTCACCAAAGAAGTGGGG TGCAACTGGGATCTCAAGCCTTGTGTTCATTGCGTTTACTGGAGGAGCAAACTTTCTTGTTGACCGAGGGATTGATATCAGAGTTAACCTCGCGGCTATC TTAGGATTGGCCTTTTTAGACTCTATCTTCCTTGGCGGAGCTTGTTTAGCTCAAATCTCAAGCTACTGGCCCCCGAATAAGCGTCGAATCTTAGTTCACG AAGCAGGTCATCTTTTGGTAGCATATCTTATGGGTTGTCCGGTTCGAGGTGTAATTTTAGACCCCATGGTTGCAATGCAAATGGGCACTCAAGGGCAGGC AGGAACTCAGTTTTGGGATGAAAAGCTGAGTAATGAGCTTGCTGAAGGGAAACTCAGTGGCACTTCGTTTGACAGGTACTGCATGGTGCTTTTTGCTGGC ATTGCAGCTGAAGCTCTGGTTTACGGCGAGGCAGAGGGTGGAGAAAATGATGAAAACCTATTTAGGAGTACCTGTGTTCTTCTGCAACCCCCATTATCTG TAGCCCAGATGTCAAATCAAGCAAGGTGGTCTGTTCTACAATCTTTTAATTTGTTAAAATGGCATAGGGATGCTCATCGAGCTGCTGTTAAAGCATTAGA AAGTGGTGGCAGTCTAAGTGTTGTAATTAGGAGGATTGAGGAAGCTATGTCTTCCGGTTGA
AA sequence Show only first row Show all	>Potri.010G171400.1 pacid=42797934 polypeptide=Potri.010G171400.1.p locus=Potri.010G171400 ID=Potri.010G171400.1.v4.1 annot-version=v4.1 MAFSSQQLLFSSQFSLPCPRTPPNRNLKAIPRAALREWKEYEDAVKRKDLARALRFLKSKETQTNNDSLADSVNGSFSNDSATRSGLGDLGLFDVLERDW EVLDTCLNADDMRLVSSAYGFLKNRGFLPSFGKFSNIVLEGPREVTPILLQSSTGLEVTKLSPKKWGATGISSLVFIAFTGGANFLVDRGIDIRVNLAAI LGLAFLDSIFLGGACLAQISSYWPPNKRRILVHEAGHLLVAYLMGCPVRGVILDPMVAMQMGTQGQAGTQFWDEKLSNELAEGKLSGTSFDRYCMVLFAG IAAEALVYGEAEGGENDENLFRSTCVLLQPPLSVAQMSNQARWSVLQSFNLLKWHRDAHRAAVKALESGGSLSVVIRRIEEAMSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56180			unknown protein		Potri.010G171400 [exp]	0	1
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.001G094500 [exp]	2.44	0.8794
					Potri.018G138206 [exp]	7.14	0.8857
AT4G13590			Uncharacterized protein family...		Potri.003G174600 [exp]	7.21	0.8429
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Potri.018G081500 [exp]	10.58	0.8424
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	14.00	0.8989
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	15.81	0.8256
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.003G019000 [exp]	16.73	0.8480
AT1G06510			unknown protein		Potri.005G203100 [exp]	18.11	0.8751
AT5G61490			Uncharacterised conserved prot...		Potri.014G057200 [exp]	18.86	0.8892
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	22.13	0.8732

Compare expression of checked genes

Potri.010G171400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.