Plant FIBer expression Database

Pt-PGK1.1 (Potri.010G171500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PGK1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G56190 769 / 0 Phosphoglycerate kinase family protein (.1.2)
AT3G12780 760 / 0 PGK1 phosphoglycerate kinase 1 (.1)
AT1G79550 691 / 0 PGK phosphoglycerate kinase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G084500
[exp]
867 / 0 AT1G56190 768 / 0.0 Phosphoglycerate kinase family protein (.1.2)
Potri.008G084400
[exp]
682 / 0 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2)
Potri.010G171600
[exp]
673 / 0 AT1G79550 718 / 0.0 phosphoglycerate kinase (.1.2)
Potri.016G091800
[exp]
182 / 3e-50 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031168
[exp]
754 / 0 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1)
Lus10031744
[exp]
752 / 0 AT3G12780 757 / 0.0 phosphoglycerate kinase 1 (.1)
Lus10031743
[exp]
684 / 0 AT1G79550 715 / 0.0 phosphoglycerate kinase (.1.2)
Lus10031167
[exp]
602 / 0 AT1G79550 621 / 0.0 phosphoglycerate kinase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00162 PGK Phosphoglycerate kinase
Representative CDS sequence
>Potri.010G171500.1 pacid=42798687 polypeptide=Potri.010G171500.1.p locus=Potri.010G171500 ID=Potri.010G171500.1.v4.1 annot-version=v4.1
ATGGCCTCCGCCACAGCACCAACAACTCTCTCTCTCCTTAAAACAGCCGCCTCCTCCACCTCCACATCTGTCCGGGCCTCCCTACTCCCAGTCTCCACCT
CCGGCCTCCGCACAACCAGCCTCCGGGGTCTTGGTTTCTCTGCTGCAGACACATTGTTTAGCTCTCATGTGGTGTCCAAAATACGATCTTTCAAGTCAAA
TGGTAAAGCACCAAGAGCAGTGGTGTCTATGGCAAAGAAGAGTGTTGGTGACTTGACAGCTGCTGATTTGAAAGGGAAGAAAGTCTTCGTTAGAGCTGAT
TTGAATGTGCCTCTTGATGATAATCAGAATATTACTGATGATACTAGAATTAGAGCCGCTATCCCTACTATTAAATACTTGATTTCAAATGGGGCTAAAG
TTATTCTTTCTAGTCATCTGGGACGACCAAAAGGTGTTACTCCAAAATTCAGCTTGGCACCTCTTGTACCCCGGTTATCTGAACTCCTTGGAATTCAGGT
TGTGAAAGCTGATGATTGCATTGGCCCAGAGGTAGAAAAATTGGTTGCTTCACTTCCTGATGGTGGTGTTCTTCTTCTTGAGAATGTCAGGTTTTACAAG
GAAGAAGAGAAGAATGAACCTGAATTTGCAAAGAAGCTTGCTTCCTTGGCAGATCTTTATGTAAATGATGCATTTGGAACTGCACATAGAGCACATGCCT
CCACTGAGGGGGTCACAAAATTCTTGAAACCATCTGTTTCTGGTTTCCTCTTGCAGAAGGAGCTGGACTACCTTGTTGGGGCAGTTTCAACCCCAAAGAG
GCCATTTGCTGCCATTGTGGGTGGTTCCAAGGTCTCATCCAAGATTGGAGTCATTGAGTCACTCCTGGAGAAGTGTGATATCCTTCTTTTGGGTGGAGGT
ATGATTTTCACATTTTACAAGGCTCAAGGCCTCCCAGTAGGTTCATCCTTGGTTGAGGAAGATAAGCTTGGTTTGGCAACATCGCTCCTTGAGAAGGCCA
AGGCAAAAGGAGTGTCTCTTTTGCTACCCAGTGATGTGATAATTGCAGACAAGTTTGCTCCTGATGCAAATAGCAAGATTGTACCTGCATCAGCCATCCC
AGATGGTTGGATGGGACTGGACATTGGACCAGAATCTGTGAAGACATTCAGTGAAGCTTTGGGAACCACCCAAACTGTCATCTGGAACGGACCCATGGGA
GTGTTTGAGTTTGACAAGTTTGCAGTTGGGACAGAGGCCATTGCAAAGAAGCTTGCTGAGCTTAGCGGCAAGGGAGTTACAACTATTATTGGAGGTGGAG
ATTCTGTTGCGGCTGTAGAAAAAGTAGGAGTTGCTGATGTTATGAGCCACATATCAACTGGCGGTGGTGCCAGCTTGGAGTTGTTGGAAGGGAAAGAGCT
TCCAGGTGTCCTTGCACTAGATGAAGTCGAACGAGTTGCTGTGTGA
AA sequence
>Potri.010G171500.1 pacid=42798687 polypeptide=Potri.010G171500.1.p locus=Potri.010G171500 ID=Potri.010G171500.1.v4.1 annot-version=v4.1
MASATAPTTLSLLKTAASSTSTSVRASLLPVSTSGLRTTSLRGLGFSAADTLFSSHVVSKIRSFKSNGKAPRAVVSMAKKSVGDLTAADLKGKKVFVRAD
LNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPDGGVLLLENVRFYK
EEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVSGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG
MIFTFYKAQGLPVGSSLVEEDKLGLATSLLEKAKAKGVSLLLPSDVIIADKFAPDANSKIVPASAIPDGWMGLDIGPESVKTFSEALGTTQTVIWNGPMG
VFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEVERVAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G56190 Phosphoglycerate kinase family... Potri.010G171500
[exp]
0 1 Pt-PGK1.1
AT4G25050 ACP4 acyl carrier protein 4 (.1.2) Potri.015G104500
[exp]
1.41 0.9777
AT1G56190 Phosphoglycerate kinase family... Potri.008G084500
[exp]
2.82 0.9776
AT4G26530 Aldolase superfamily protein (... Potri.001G468100
[exp]
6.00 0.9581 Pt-FBA.2
AT3G04760 Pentatricopeptide repeat (PPR-... Potri.013G047000
[exp]
6.00 0.9703
AT5G40950 RPL27 ribosomal protein large subuni... Potri.001G329500
[exp]
9.79 0.9707 Pt-RPL27.5
AT2G39730 RCA rubisco activase (.1.2.3) Potri.008G058500
[exp]
10.67 0.9652 RCA.2
AT1G49975 unknown protein Potri.001G292000
[exp]
10.72 0.9683
AT3G27160 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribo... Potri.001G331600
[exp]
11.53 0.9650 GHS1.1
AT1G76450 Photosystem II reaction center... Potri.005G256600
[exp]
13.41 0.9438
AT2G26500 cytochrome b6f complex subunit... Potri.004G147300
[exp]
13.56 0.9642

Potri.010G171500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.