Plant FIBer expression Database

PGK.1 (Potri.010G171600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PGK.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79550 718 / 0 PGK phosphoglycerate kinase (.1.2)
AT3G12780 677 / 0 PGK1 phosphoglycerate kinase 1 (.1)
AT1G56190 672 / 0 Phosphoglycerate kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G084400
[exp]
761 / 0 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2)
Potri.010G171500
[exp]
676 / 0 AT1G56190 769 / 0.0 Phosphoglycerate kinase family protein (.1.2)
Potri.008G084500
[exp]
675 / 0 AT1G56190 768 / 0.0 Phosphoglycerate kinase family protein (.1.2)
Potri.016G091800
[exp]
167 / 6e-46 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031743
[exp]
728 / 0 AT1G79550 715 / 0.0 phosphoglycerate kinase (.1.2)
Lus10031168
[exp]
676 / 0 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1)
Lus10031744
[exp]
676 / 0 AT3G12780 757 / 0.0 phosphoglycerate kinase 1 (.1)
Lus10031167
[exp]
636 / 0 AT1G79550 621 / 0.0 phosphoglycerate kinase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00162 PGK Phosphoglycerate kinase
Representative CDS sequence
>Potri.010G171600.4 pacid=42798219 polypeptide=Potri.010G171600.4.p locus=Potri.010G171600 ID=Potri.010G171600.4.v4.1 annot-version=v4.1
ATGGCCACTAAGAAGAGTGTTAGCAGTTTAAAGGAAACAGATTTGAAGGGAAAGAGAGTGTTTGTGAGGGTAGATCTGAATGTTCCTTTGGATGATAACT
TTAATATTACTGATGATACTAGGATCCGTGCTGCTGTACCCACTATCAAGTACTTGATGGATCATGGTGCCAGAGTTATTCTATGCTCTCACTTGGGACG
CCCAAAGGGTGTTACACCTAAATACAGCTTGAAGCCTCTTGTACCAAGGCTATCCGAACTTCTTGGTGTTGAGGTTAAGATAGCAAATGATTGTATTGGC
GAGGAAGTTGAGAAATTGGTGGCTGAGATTCCGGGAGGAGGTGTTTTGCTTCTTGAAAATGTAAGGTTCCACAAGGAGGAAGAGAAGAATGACCCTGAAT
TTGCAAAGAAGCTTGCTTCTCTAGCAGAAGTCTATGTGAATGATGCATTTGGCACTGCTCACAGAGCCCATGCTTCCACTGAGGGAGTGGCTAAATACTT
GAAGCCCGCTGTTGCTGGTTTCCTTATGCAGAAGGAACTTGACTATCTTGTTGGAGCTGTGGCAAATCCCAAGAAGCCATTTGCTGCAATTGTTGGTGGC
TCAAAGGTATCATCCAAGATTGGAGTGATTGAATCCCTCTTAGAGAAGGTTGACTTCCTCTTCTTGGGTGGAGGAATGATCTTTACTTTTTACAAAGCCC
AAGGGTACTCAGTTGGGTCATCCCTTGTGGAGGAAGACAAGCTTGATCTTGCAACTTCACTTATTGAGAAGGCCAAGGTCAAGGGGGTAAAACTACTGCT
GCCTACCGATGTGGTTGTTGCTGACAAGTTTGCTCCAGATGCCAACAGCAAGGTGGTACCAGCTTCTGAGATAGCAGATGGTTGGATGGGTTTGGATATA
GGACCTGATTCTATCAAGACATTCAGTGAGGCATTGGATACAACCAAAACCATTATTTGGAATGGACCAATGGGTGTGTTTGAGTTCGAGAAGTTTGCAG
CAGGAACTGAGGCAATCGCCTGGAAGCTTGCTGAGCTCAGTGGCAAGGGAGTGACTACCATCATTGGAGGAGGTGACTCTGTTGCTGCTGTGGAGAAGGT
TGGGCTCGCTGATAAGATGAGCCACATCTCAACAGGAGGTGGTGCCAGCTTAGAGCTTCTTGAGGGGAAACCGCTGCCTGGAGTCCTGGCTCTTGACGAC
GCCTAA
AA sequence
>Potri.010G171600.4 pacid=42798219 polypeptide=Potri.010G171600.4.p locus=Potri.010G171600 ID=Potri.010G171600.4.v4.1 annot-version=v4.1
MATKKSVSSLKETDLKGKRVFVRVDLNVPLDDNFNITDDTRIRAAVPTIKYLMDHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDCIG
EEVEKLVAEIPGGGVLLLENVRFHKEEEKNDPEFAKKLASLAEVYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVANPKKPFAAIVGG
SKVSSKIGVIESLLEKVDFLFLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKVKGVKLLLPTDVVVADKFAPDANSKVVPASEIADGWMGLDI
GPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAWKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDD
A

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79550 PGK phosphoglycerate kinase (.1.2) Potri.010G171600
[exp]
0 1 PGK.1
AT1G79550 PGK phosphoglycerate kinase (.1.2) Potri.008G084400
[exp]
4.35 0.8924
AT3G04780 Protein of unknown function (D... Potri.013G039500
[exp]
9.05 0.8904
AT5G55190 RAN3, ATRAN3 RAN GTPase 3 (.1) Potri.006G250400
[exp]
9.43 0.8308 Pt-RAN1.1
AT5G20500 Glutaredoxin family protein (.... Potri.018G133400
[exp]
14.28 0.8812
AT1G51650 ATP synthase epsilon chain, mi... Potri.010G250000
[exp]
15.32 0.8830
AT2G42210 ATOEP16-3 Mitochondrial import inner mem... Potri.006G059300
[exp]
16.79 0.8901
AT5G35620 eIFiso4E, EIF(I... LOSS OF SUSCEPTIBILITY TO POTY... Potri.010G066700
[exp]
19.07 0.8559
AT1G72020 unknown protein Potri.019G081700
[exp]
25.49 0.8710
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Potri.013G051500
[exp]
25.51 0.8780
AT4G37830 cytochrome c oxidase-related (... Potri.007G008800
[exp]
26.98 0.8767

Potri.010G171600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.