Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44800 74 / 3e-14 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110100 [exp] 73 / 9e-14 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 73 / 1e-13 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.010G171800 [exp] 45 / 2e-06 AT5G44800 47 / 2e-07 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036223 [exp] 74 / 7e-14 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10038363 [exp] 73 / 1e-13 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10009558 [exp] 66 / 7e-12 AT5G44800 91 / 6e-20 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10020383 [exp] 65 / 3e-11 AT5G16500 358 / 4e-110 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G172100.4 pacid=42799039 polypeptide=Potri.010G172100.4.p locus=Potri.010G172100 ID=Potri.010G172100.4.v4.1 annot-version=v4.1 ATGGAAAGAACATCCAAGAAATATGCTCCTACTAAAGAACAGCTGAATGCTCTCAATCATGATGGTGATGAAAAAGGAACAGAAACTTGTACTAGAGCAA ATGAAATAAGAGAAGGAGCGGATACTGATCCAAGCAAATCAACATGGTTTTGTGATTCTTCTGAAATGGTGAAAGGAGATCGTGCAGATAAACCTGTTAT CAATACTTCAAGTTTGCTTGATGGCTCAGGCATTCAATTTTGGTCAGGTGAAAAGGCTGACAGGCTTTCTGAAAGTGAAGATCTTAATGCACCCCGCAAC AAAAAACCAATAGAAGAGCAAGGGGAAATGATGGCATGCCTAGGCCAAGCAACAAATAATGATATTTGTCCAGCAAGTGATAATGTGAATCAGTGTGACA AGCTGTTGGTTCTGAGGGATGTCATGCTGGAAACAACAACGGGTCATTACAAGTCCAAGCGGAATATTGGAGGGAGGGAATTACAGCAGGCATGGCTGCC TGAATATACAGAAGCTGGAAAAGCTCTGAAAGAAAAGGATGCCAAGCTTCGTGCAAGACAGAAACAAAAGCTTGCTCTGAGGAACAATAGTACCATTCTC AGTCCAGCAACCATTGAACAAGTGCCAGATGCTTGGTCGGACATGGAGCTTGATTCCCTTTGGGTGGGAGTCCGAAGACATGGGCAGGGAAACTGGGAAG CAATGCTCAGGGACCCATTGCTTTTTTTCAAGGGTAAAACTGTAGAACATTTAACACAAAGGTGGATGAAAGAGAGACTTCAAATCTTCAACCTTGAAAA ATATGGAAATCCACAGGTCGACAGGCATCAGGTAGCTGGAACTACCTCACTATCATCCAAGGATCAACTCTCTTCAGGGGAGGTGAAGATAGATGAACCA ACGCTTCTTCTTGGGGGGATTATTTCGGATTTCCATTGCAATCAGGGACTTGAATCAAATTCAGCCGAAGTATTCAACCACAAACAAACAGCCTTTACGA AAATAGGCAAAGGCTACATGCAAAGAGACAAAGATACCTTCAACTGA
AA sequence Show only first row Show all	>Potri.010G172100.4 pacid=42799039 polypeptide=Potri.010G172100.4.p locus=Potri.010G172100 ID=Potri.010G172100.4.v4.1 annot-version=v4.1 MERTSKKYAPTKEQLNALNHDGDEKGTETCTRANEIREGADTDPSKSTWFCDSSEMVKGDRADKPVINTSSLLDGSGIQFWSGEKADRLSESEDLNAPRN KKPIEEQGEMMACLGQATNNDICPASDNVNQCDKLLVLRDVMLETTTGHYKSKRNIGGRELQQAWLPEYTEAGKALKEKDAKLRARQKQKLALRNNSTIL SPATIEQVPDAWSDMELDSLWVGVRRHGQGNWEAMLRDPLLFFKGKTVEHLTQRWMKERLQIFNLEKYGNPQVDRHQVAGTTSLSSKDQLSSGEVKIDEP TLLLGGIISDFHCNQGLESNSAEVFNHKQTAFTKIGKGYMQRDKDTFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	0	1
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	1.00	0.8828
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	2.44	0.8754
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	2.82	0.8436
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	3.46	0.8725
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.014G077200 [exp]	3.74	0.8153
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	3.74	0.8492
AT4G36980			unknown protein		Potri.005G138200 [exp]	4.24	0.8806
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	4.35	0.8004
AT1G21610			wound-responsive family protei...		Potri.007G101201 [exp]	5.65	0.7728
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	6.00	0.8618

Compare expression of checked genes

Potri.010G172100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.