Plant FIBer expression Database

Potri.010G172300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16290 567 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G084100
[exp]
736 / 0 AT1G16290 569 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036958
[exp]
625 / 0 AT1G16290 561 / 0.0 unknown protein
Lus10037104
[exp]
621 / 0 AT1G16290 558 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0037 Lysozyme PF01464 SLT Transglycosylase SLT domain
Representative CDS sequence
>Potri.010G172300.4 pacid=42797121 polypeptide=Potri.010G172300.4.p locus=Potri.010G172300 ID=Potri.010G172300.4.v4.1 annot-version=v4.1
ATGGCCACCAGCTTTGATTATTGGAATGACTGCGTTGACGTCCAGGACATGGAAGCAATGTGGCAGGAACCTGAAGTTAGCACTGAATGGTTAGATGCTG
GAGAGACTAAAGGAAATAAAGTTCACCTTTCACGGGATCCCGATGGAGAGCCTTATTTGACGCAGACTGAGATGAAGGCTGTAGCTGATATCATTGTCCG
AAGACATTTTGATTCACAGATACAGCCGGACATGATATGTGCTGTAGCTGAACTTGCAAGTGATAGACAGCCCCTCTCTACACGGTGGTATGATAAGAAA
ACTAAGGAGACAGCCCTGGGGATCATGCAGATTTTACCAAAAACAGCAGAGTGGCTGGTCAGGGACTTAGGTTATCAGGCATATGAAGTAGAAGGGAATC
CAGATATTCTATATCGACCTTTTGTTAGCGTCTATTTTGGTGCTGCTTATATTAAATGGTTATCGAACTTCGAAGAAGAAGAAAGAAGTGAAGAGTTCGT
AGTTAGGGCGTATAATGGTGGTACGAAAAAAGCAACTCACAAATCAACTTTGCAATATTGGAAACGGTACCTTTCAGTCAAAGAAAGTCTCCCATCCAGA
AGATTTGTCGATGAAGGTCCTTCAGTAAACAATGCTCATTCTTCAACTGCTCAAGCTGCACCTGCTACACAAAATACAAATGCACCTTCTTCAGAAAAAA
CAGGTGTTGATTATATATATTGGGACTCTAAAGCTTCCCCAGAAGAAATGCAAGAGATGTGGAGTCGTTCTGAAGTTGCAAAAGAGTGGACGAAATCTGG
AGAAAAAAGAGGAAAGGTGCGCTTTTCACATGACAAGGACATGAAACCATATCTATCTCGGGTAGAAATGAAGGCAGTTGCAGACATAATTCTTTCAAAA
CACTTCAGTACAAGGGGAGTTAAACCTTCAGTCATTTGTGCTCTTGCTGAGATGGTGAGCATGCGTTTTGTGAATGGGGTTGGACCGCGAATCGGATTAA
TGGGAATCGACTACTCTACAGCTTTCTGGCTTTACATGGAATTGGGTTACAGGGCTTATAGATTAGATTCCGCTGGTGATCTGACCAAGCCATTTGTGTC
TATGTACTTTGGTGCAGCCTATTTGGCCTGGTTATCGGAATATGAAGGGAGGGAAAGAACTCCACAGTTTGTCGTTCCAGCTTATCTTTCTGGGCCAAAG
AATGTGAACCATCAAGAGACCGGTCCCCTTTGGCTTAAATTCGAGCAAGCTTTGAGCAATTATGAAGACATAAAGAGGGATCCCGGAAATTGCACCATCC
TGTAA
AA sequence
>Potri.010G172300.4 pacid=42797121 polypeptide=Potri.010G172300.4.p locus=Potri.010G172300 ID=Potri.010G172300.4.v4.1 annot-version=v4.1
MATSFDYWNDCVDVQDMEAMWQEPEVSTEWLDAGETKGNKVHLSRDPDGEPYLTQTEMKAVADIIVRRHFDSQIQPDMICAVAELASDRQPLSTRWYDKK
TKETALGIMQILPKTAEWLVRDLGYQAYEVEGNPDILYRPFVSVYFGAAYIKWLSNFEEEERSEEFVVRAYNGGTKKATHKSTLQYWKRYLSVKESLPSR
RFVDEGPSVNNAHSSTAQAAPATQNTNAPSSEKTGVDYIYWDSKASPEEMQEMWSRSEVAKEWTKSGEKRGKVRFSHDKDMKPYLSRVEMKAVADIILSK
HFSTRGVKPSVICALAEMVSMRFVNGVGPRIGLMGIDYSTAFWLYMELGYRAYRLDSAGDLTKPFVSMYFGAAYLAWLSEYEGRERTPQFVVPAYLSGPK
NVNHQETGPLWLKFEQALSNYEDIKRDPGNCTIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16290 unknown protein Potri.010G172300
[exp]
0 1
AT1G52330 Late embryogenesis abundant (L... Potri.001G180600
[exp]
3.46 0.8865
AT1G69370 CM-3, CM3 chorismate mutase 3 (.1) Potri.010G162300
[exp]
4.24 0.8439
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.008G082301
[exp]
5.09 0.8854
AT3G59520 ATRBL13 RHOMBOID-like protein 13 (.1) Potri.017G027800
[exp]
5.19 0.8170
AT1G77460 Armadillo/beta-catenin-like re... Potri.002G081101
[exp]
10.77 0.8653
AT5G53120 SPMS, SPDS3, AT... spermidine synthase 3 (.1.2.3.... Potri.015G018900
[exp]
14.14 0.8182
AT5G18980 ARM repeat superfamily protein... Potri.010G029300
[exp]
16.00 0.8449
Potri.015G138050
[exp]
17.32 0.8326
AT4G00660 ATRH8 RNAhelicase-like 8 (.1.2) Potri.014G081100
[exp]
18.43 0.8118
Potri.004G012000
[exp]
20.49 0.8548

Potri.010G172300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.