Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16300 617 / 0 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G79530 595 / 0 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G13440 450 / 2e-158 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT3G04120 448 / 8e-158 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G42970 274 / 5e-88 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 256 / 6e-82 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 247 / 3e-78 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083900 [exp] 689 / 0 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.012G094100 [exp] 457 / 5e-161 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.001G335800 [exp] 456 / 1e-160 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.010G055400 [exp] 454 / 4e-160 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.015G091400 [exp] 453 / 1e-159 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G179300 [exp] 449 / 4e-158 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.002G007100 [exp] 266 / 3e-85 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.005G254100 [exp] 266 / 1e-84 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 250 / 5e-79 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000872 [exp] 629 / 0 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10009602 [exp] 626 / 0 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10015826 [exp] 460 / 3e-162 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 455 / 2e-160 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 455 / 2e-160 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 453 / 1e-159 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10032071 [exp] 452 / 4e-159 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10014603 [exp] 452 / 4e-159 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 443 / 3e-155 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10016033 [exp] 267 / 3e-85 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00044 [poplar] [flax] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02800 [poplar] [flax] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G172400.1 pacid=42797544 polypeptide=Potri.010G172400.1.p locus=Potri.010G172400 ID=Potri.010G172400.1.v4.1 annot-version=v4.1 ATGGCTTTCTCTTGTCTTCTCAGATCTACGCCCGCCGCTCCTCTTGTTGAAGCTTCCCGCTCCGACTTCTCTCCTTCACCGTCCGATCGATTCAAGGTGT CTAGCGTTAGTTTTAACTCTTTGAAGAGCATTTTTGGCACTTCAATTCCAACAGGGTCATCTTCCTCACAGACATGCAGTGGAAGGAGCATCCAACCCAT CAAGGCCACAGCTACCGAAATGCCTCCCACAGTTTTAAAATCGCGGGCTGATGGAAAGACGAAGATTGGAATCAATGGTTTTGGTCGTATTGGTAGATTG GTTTTGCGAGTAGCAACTTTCAGGGATGATATTGATGTGGTGGCAGTGAACGATCCTTTCATTGATGCTAACTACATGGCTTACATGTTTAAATATGATT CTACTCATGGCGTTTTCAGTGGAACCATCAAGGTCTTAGATGATTCCAACTTGGAAATCAATGGGAAGCAAATCAAAATTACAAGCAAAAGGGATCCCAC AGAGATCCCTTGGGGTGATTTTGGGGCCGAGTATGTGGTTGAATCATCTGGTATTTTCACTACAGTTGAGAAGGCTGCAGCTCACATGAAGGGTGGTGCG AAGAAAGTGGTCATATCAGCTCCCTCAGCTGATGCTCCGATGTTTGTAGTTGGAGTAAATGAGAAGACATACAAGCCAAACATGGACATTGTTTCCAATG CAAGTTGCACTACCAATTGCCTTGCTCCTCTTGCTAAGGTTGTTCATGAGGAATTTGGTATCATTGAAGGTTTAATGACAACTGTCCATGCAACCACAGC AACTCAAAAGACTGTAGATGGTCCATCAAGGAAGGATTGGCGTGGTGGCCGAGGAGCAGCACAAAATATCATTCCCAGTTCCACTGGCGCTGCAAAGGCT GTTGGAAAAGTTCTTCCAGAACTCAACGGAAAACTTACTGGAATGGCCTTCCGTGTCCCAACACCTAATGTTTCTGTCGTGGACTTAACTTGTCGACTTG AGAAGAGTGCATCATATGAAGATGTCAAGGCAGCTATTAAGTACGCATCAGAAGGCCCACTTAAGGGCATTCTTGGGTATACTGACGATGATGTTGTCTC CAGTGATTTTCTTGGTGACTCAAGGTCAAGCATATTTGATGCCAAAGCTGGTATAGGATTGAGTGCTTCCTTCATGAAGCTTGTTTCTTGGTACGACAAC GAGTGGGGTTACAGCAACCGAGTGCTGGACCTTATCGAGCACATGGCGTTGGTGGCAGCACACAATTAA
AA sequence Show only first row Show all	>Potri.010G172400.1 pacid=42797544 polypeptide=Potri.010G172400.1.p locus=Potri.010G172400 ID=Potri.010G172400.1.v4.1 annot-version=v4.1 MAFSCLLRSTPAAPLVEASRSDFSPSPSDRFKVSSVSFNSLKSIFGTSIPTGSSSSQTCSGRSIQPIKATATEMPPTVLKSRADGKTKIGINGFGRIGRL VLRVATFRDDIDVVAVNDPFIDANYMAYMFKYDSTHGVFSGTIKVLDDSNLEINGKQIKITSKRDPTEIPWGDFGAEYVVESSGIFTTVEKAAAHMKGGA KKVVISAPSADAPMFVVGVNEKTYKPNMDIVSNASCTTNCLAPLAKVVHEEFGIIEGLMTTVHATTATQKTVDGPSRKDWRGGRGAAQNIIPSSTGAAKA VGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDDDVVSSDFLGDSRSSIFDAKAGIGLSASFMKLVSWYDN EWGYSNRVLDLIEHMALVAAHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.010G172400 [exp]	0	1
AT1G74030		ENO1	enolase 1 (.1)		Potri.012G057500 [exp]	1.00	0.7805
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	3.74	0.6812
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	4.47	0.6874	UXS2.2
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	4.69	0.7511
AT4G14420			HR-like lesion-inducing protei...		Potri.008G165200 [exp]	5.19	0.7060
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	8.71	0.6225
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	10.72	0.6188
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.013G094400 [exp]	12.24	0.6864
AT1G80630			RNI-like superfamily protein (...		Potri.003G179100 [exp]	14.07	0.6662
AT5G12470			Protein of unknown function (D...		Potri.009G051800 [exp]	16.73	0.6693

Compare expression of checked genes

Potri.010G172400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.