Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13010 1715 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G26560 729 / 0 ATP-dependent RNA helicase, putative (.1) AT2G35340 650 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G32490 649 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G62310 561 / 0 RNA helicase family protein (.1) AT2G47250 556 / 0 RNA helicase family protein (.1) AT4G18465 500 / 6e-162 RNA helicase family protein (.1) AT1G26370 488 / 5e-157 RID1 RNA helicase family protein (.1) AT1G27900 483 / 2e-155 RNA helicase family protein (.1) AT4G16680 439 / 2e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034200 [exp] 739 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 739 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 657 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.002G192500 [exp] 560 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 559 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 509 / 5e-165 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 491 / 4e-158 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 487 / 3e-156 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 323 / 2e-90 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000873 [exp] 1042 / 0 AT5G13010 1063 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10009601 [exp] 850 / 0 AT5G13010 840 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10009600 [exp] 836 / 0 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10036783 [exp] 742 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 655 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 635 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10000874 [exp] 556 / 0 AT5G13010 561 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10033690 [exp] 566 / 3e-179 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 539 / 1e-175 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 493 / 1e-158 AT1G27900 1097 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.010G172500.1 pacid=42797187 polypeptide=Potri.010G172500.1.p locus=Potri.010G172500 ID=Potri.010G172500.1.v4.1 annot-version=v4.1 ATGGATATAGACAAGTCAGTAGTTACAATGGAAGCAGAGCAGAGCAATGGTAGTGCCGGAGGCTTATTTGTTCCTAAAAAGGAGAAACTCGAATTTCGGC CTCCTGAAAGGAAATCACTTTTAGGTTTAGATGTACTTGCGATTGCGAAACGAGGAGGATCTGATGCAAATGGAGGAGGATTTAAGGCTCCAAAGGAAAG AGCTACAACTTCTTTTATGGCGTCGATTGATGAAGAGGAAGAGGCTACTGAATCTTCTGGATTAGATGAAGTAGAAAACGATGGTGGAAGTGAGAGTGGT GTACGCAGAAATGTAAATAGGCGATATCGGGAAACCTCCTCTAGCGAGAAAAGTGCTGTGACACGAGAGGGATCGCATAGTAACACACACGGAACTTCTC GTTCTAGAGAAAATCTGTCATCAGATGATTGTGCTACTTATACCGGGAGTTCCCGGAGTGTTAAGTCTAGGAGTCCTGGGAGTGAGAGAGATGACCGAGG TAGGGATAGAAAAGGCCTTAAAGATGATGCTAGGGATGAAAGCAGGAGGGGGAGAGACAGGCACAGCAGTGATCGTGAAGAACGGTATCGTGGAAGGGAA GCACGTGGACGGTATGAACAGGAGTATGATGGAGACTATGGAAGAAAACGAAGTCGGTATGAAGGTTCAAGGAGGACACCAGGCAGGTCTGATTGGGATG ATGGGAGATGGGAATGGGAAGAAACACCTCGGCAGGATAGTTATAATACTAGCCGACGCCACCACCCTTCCCCATCGCCAATGTTTGTTGGTGCCTCACC TGATGCACGATTAGTTTCCCCATGGATGGGTGGCCAAACACCTCGCAGTAGTGGTTCTGCTGCTTCTCCTTGGGATCACATTTCTCCCTCGCCAGTTCCA ATACGTGCTTCTGGATCATCATTTAGGTCTTCCACTTCTAAATATGGTGGGAGGTCCCATCAACTTACTTTTTCCACCACAAGTGCGCCATCATTGGAGG ATGGTGAAGGAGATAAAACTTATTCATCCGAGGAGCACAATCATGAGATTACTGAAAGTATGCGTCAAGAGATGGAATACAATTCTGACCGAGCCTGGTA CGATAGAGAAGAAGGCAATACAATGTTTGATGCTGATAGCTCATCATTCTTCCTTGGGGATAACGCCTCATTCCAGAAAAAGGAGGCAGAGTTGGCCAAA AGACTGGTTCGAAGAGATGGAACTAAAATGTCACTTGCTCAAAGCAAAAAGTTATCTCAGCTTAGTGCTGATAATGCCCAATGGGAGGATCGGCAACTTA TGAGATCTGGGACAGTTAGAGGTACCGAAGTGCAGACTGAGTTTGATGATGAGGAAGAGCACAAGGTTATTCTTCTTGTACATGACACAAAGCCTCCTTT CCTGGATGGAAGAGTTGTTTTTACCAAACAAGCGGAGCCAATAATGCCCCTAAAAGATCCCACCTCAGATATGGCCATTATTTCAAGGAAAGGATCTGCT CTGGTCAGAGAAACTCATGAGAAGCAAAGCATGAATAAATCACGTCAGCGGTTTTGGGAGCTTGCCGGCTCAAAACTCGGTGATATTCTTGGTGTAGAGA AAACTGCTGAACAGATTGATGCTGACACTGCAGCTGTTGGTGAGGAAGGTGAAATTGATTTCAAGGAAGATGCAAAATTTGCACAGCATATGAAAAAGGG GGAAGCTGTAAGTGATTTTGCAAAGTCAAAAACTCTATCCGAGCAGCGGCAATATCTACCTATATATTCAGTGCGAGATGAGTTGTTGCAGGTCATTCGT GAAAATCAAGTGATAGTTGTTGTTGGAGAGACTGGTTCAGGAAAGACAACTCAACTGACACAGTATCTCCATGAAGATGGGTATACAACAAATGGGATAG TTGGTTGCACCCAACCAAGGCGTGTTGCAGCCATGAGTGTTGCAAAAAGAGTTAGCGAAGAGATGGACACTGAATTGGGGGATAAAATAGGTTATGCCAT TCGTTTTGAGGATGTGACTGGGCCAAATACAATAATTAAGTACATGACTGATGGAGTACTCTTGCGTGAGACACTGAAAGATTCTGACCTTGATAAGTAT CGTGTCATTGTCATGGATGAAGCACATGAGAGATCATTAAGCACAGATGTGTTGTTTGGGATTTTGAAAAAGGTGGTTGCCCAGCGTCGTGACTTCAAAC TCATTGTGACATCTGCAACTCTAAATGCGCAGAAATTTTCAAATTTCTTTGGGAGTGTACCTATTTTCCACATCCCTGGAAGAACATTTCCAGTAAATAT CTTGTACAGTAAAAGTCCTTGTGAAGATTATGTTGAAGGTGCAGTGAAGCAGGCCATGACTATCCACATTACCAGTCCTCCTGGCGACATTCTCATTTTC ATGACTGGCCAAGATGAGATTGAGGCGGCCTGTCATGCTCTTGCAGAGCGCATGGAACAGCTTACCTCCTCCTCCAAGAAAGCAGTGCCTAAACTCTTAA TACTACCCATATACTCCCAACTTCCAGCTGATTTACAAGCGAAGATATTCCAAAACGCTGAAGACGGGGCCCGCAAATGCATTGTCGCCACCAACATTGC TGAGACTTCTTTGACTGTAGATGGAATTTATTATGTCATTGACACGGGTTATGGAAAAATGAAAGTCTACAACCCAAAGATGGGTATGGATGCTCTCCAA GTTTTCCCTGTTAGTCGTGCTGCTGCAGATCAGCGTGCTGGGCGTGCTGGTAGAACTGGTCCGGGCACATGTTATAGGCTTTATACAGAGAGTGCTTACC TAAATGAAATGCTTCCCAGTCCAGTTCCAGAGATCCAGCGGACAAACCTTGGCAATGTGGTTTTGTTGCTCAAGTCGCTTAAAATTGAAAATTTGCTGGA CTTTGATTTCATGGACCCACCACCACAGGACAACATCCTTAATTCTATGTACCAGTTGTGGGTCTTGGGTGCTCTAAACAATGTTGGTGCCCTTACTGAT CTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCCCCTCTAGCTAAGATGCTCTTGATAGGTGAACAGTTAGGGTGTATAAATGAGGTTTTGACAATTG TGTCGATGCTTTCAGTGCCATCAGTGTTTTTTCGGCCCAAGGATAGAGTGGAGGAGAGTGATGCTGCAAGAGAAAAGTTCTTTGTGCCAGAGTCCGACCA CTTGACTCTTCTTAATGTTTACTTGCAGTGGAAAGAGCACCAGTACCGGGGAGATTGGTGTAATGATCATTTTTTGCATGTCAAAGGATTACGAAAGGCT AGAGAGGTTAGATCCCAGCTGCTAGACATTCTCAAGACATTAAAAATCCCGCTAACATCCTGTGGGTATGATTGGGACGTTGTACGGAAAGCCATCTGCT CTGCATATTTCCACAATTCAGCGAGATTAAAGGGTGTCGGGGAGTATGTTAATTGCCGGAACGGAATGCCTTGTCATTTACACCCAAGCAGTGCTCTTTA TGGTTTAGGCTACACTCCAGATTATGTAGTCTATCATGAATTGATCTTGACAACAAAGGAGTACATGCAATGCGCCACTGCAGTGGAGCCCCAGTGGTTG GCTGAGCTGGGACCAATGTTTTTCTCTGTGAAAGATTCAGACACCTCAATGCTGGAGCACAAGCGAAAGCAGAAAGAAGAGAAAACAGCAATGGAAGAGG AAATGGAGAATTTGAGGAAGGTGCAAGCCGAGACGGACAGAGAAAGCAAGGAGAAGGAAAGGGAGAAGAGGGCAAAGCGGCAGCAACAAGTCTCAATGCC TGGGTTGAAGAAAGGCTCTTCCACATACTTGAGACCGAAGAAGTTCGGTTTGTAA
AA sequence Show only first row Show all	>Potri.010G172500.1 pacid=42797187 polypeptide=Potri.010G172500.1.p locus=Potri.010G172500 ID=Potri.010G172500.1.v4.1 annot-version=v4.1 MDIDKSVVTMEAEQSNGSAGGLFVPKKEKLEFRPPERKSLLGLDVLAIAKRGGSDANGGGFKAPKERATTSFMASIDEEEEATESSGLDEVENDGGSESG VRRNVNRRYRETSSSEKSAVTREGSHSNTHGTSRSRENLSSDDCATYTGSSRSVKSRSPGSERDDRGRDRKGLKDDARDESRRGRDRHSSDREERYRGRE ARGRYEQEYDGDYGRKRSRYEGSRRTPGRSDWDDGRWEWEETPRQDSYNTSRRHHPSPSPMFVGASPDARLVSPWMGGQTPRSSGSAASPWDHISPSPVP IRASGSSFRSSTSKYGGRSHQLTFSTTSAPSLEDGEGDKTYSSEEHNHEITESMRQEMEYNSDRAWYDREEGNTMFDADSSSFFLGDNASFQKKEAELAK RLVRRDGTKMSLAQSKKLSQLSADNAQWEDRQLMRSGTVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEPIMPLKDPTSDMAIISRKGSA LVRETHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAAVGEEGEIDFKEDAKFAQHMKKGEAVSDFAKSKTLSEQRQYLPIYSVRDELLQVIR ENQVIVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKIGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDKY RVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKSPCEDYVEGAVKQAMTIHITSPPGDILIF MTGQDEIEAACHALAERMEQLTSSSKKAVPKLLILPIYSQLPADLQAKIFQNAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPKMGMDALQ VFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGALTD LGWKMVEFPLDPPLAKMLLIGEQLGCINEVLTIVSMLSVPSVFFRPKDRVEESDAAREKFFVPESDHLTLLNVYLQWKEHQYRGDWCNDHFLHVKGLRKA REVRSQLLDILKTLKIPLTSCGYDWDVVRKAICSAYFHNSARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATAVEPQWL AELGPMFFSVKDSDTSMLEHKRKQKEEKTAMEEEMENLRKVQAETDRESKEKEREKRAKRQQQVSMPGLKKGSSTYLRPKKFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Potri.010G172500 [exp]	0	1
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	1.00	0.8671
AT4G20020			unknown protein		Potri.004G218800 [exp]	6.32	0.8579
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	7.74	0.8357
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	13.96	0.8437
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	14.38	0.8249
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	14.69	0.8285
					Potri.009G112922 [exp]	14.83	0.8194
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	15.32	0.8370
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.011G148800 [exp]	15.49	0.7902
AT3G50370			unknown protein		Potri.005G137700 [exp]	15.87	0.8396

Compare expression of checked genes

Potri.010G172500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.