Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16310 585 / 0 Cation efflux family protein (.1) AT1G79520 565 / 0 Cation efflux family protein (.1.2) AT2G39450 399 / 9e-138 ATMTP11 Cation efflux family protein (.1) AT3G58060 340 / 3e-114 Cation efflux family protein (.1) AT2G47830 49 / 5e-06 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172900 [exp] 678 / 0 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 545 / 0 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 534 / 0 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 513 / 0 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.008G049600 [exp] 434 / 1e-151 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 433 / 4e-151 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 350 / 3e-118 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.003G215600 [exp] 341 / 7e-115 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 337 / 3e-113 AT3G58060 540 / 0.0 Cation efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001768 [exp] 509 / 1e-179 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 505 / 4e-179 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 446 / 3e-156 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 440 / 7e-154 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 359 / 6e-122 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 357 / 2e-121 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10000061 [exp] 162 / 1e-47 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016242 [exp] 91 / 2e-22 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10040922 [exp] 52 / 7e-07 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family PF16916 [poplar] [flax] ZT_dimer Dimerisation domain of Zinc Transporter
Representative CDS sequence Show only first row Show all	>Potri.010G172800.4 pacid=42797179 polypeptide=Potri.010G172800.4.p locus=Potri.010G172800 ID=Potri.010G172800.4.v4.1 annot-version=v4.1 ATGGCTAGAGAGAGTGGCGGCGGCGGCACTGATTATACAACAGAAGATGATAACACTCATTTGCTTCCTCCACCGGCCTCATGGAGATTAGATATTGATA AGTTCCGTCTTCCTCGAGAAAGTCATAAGCATGGCAGTCATGATCGAGTCTCTTCTTTCTCCCTGGACCGTCTCCTCCCTACTTCAAGGAAGCAACGCAA GGTTTCTGAATACTACAAGAAACAAGAAAGGCTACTTGAAGGGTATAATGAGATGGAGGCCATGACTGAATCGGGTTGTTTCCCTGGAAATCCGACAGAG GATGAAATGAAGCAGCTGGCAAAGAGTGAGCGACTGGCAATTCATATTTCCAATGTAGCTAACTTGCTACTATTTGCAGCAAAGGTTTATGCTTCTATGG AGAGCAAATCTTTGGCAGTTATTGCTTCAACTCTGGACTCCCTACTGGATCTCTTGTCGGGATTTATTTTGTGGTTCACTTCCCATGCCATGAAAAAGCC AAACCATTACCACGACTATCCAATTGGAAAGAAACGGATGCAGCCCGTGGGCATCATTGTCTTTGCATCTGTAATGGCGACACTGGGATTGCAAATTCTT CTTGAGTCTGGTCGGCAGCTCGTTTTGAAGAAAGGGCCTAGAATGGATAATGGGCAGGAGAAATGGATGATTGCCATAATGGTTTCTGTCACGGTAGTGA AGTTTCTGCTAATGCTCTATTGTCGAAGATTTAAGAATGAAATTGTCAGAGCCTATGCTCAAGATCATCTTTTTGACGTCGTAACAAATTCAGTTGGTTT GATAACAGCCGTCCTAGCAGTCCGATATTACTGGTGGATCGATCCTACTGGAGCTATTATAATAGCGTTGTATACCATCACCACATGGGCCAGAACAGTT ATCGAGAATGTATGGTCTTTGATCGGAAGAACTGCCCCGCCTGAGTTTCTAGCAAAGCTAACATACCTGATATGGAATCACCATAAAGAGATCAAGCACA TTGACACAGTTAGGGCATACACTTTCGGTAACCATTACTTTGCGGAGGTTGACATAGTCTTGCCAGAAGACATGGTTTTGAACCAAGCACATAATATCGG CGAGGATCTCCAAGAGAAGCTTGAGCAGTTGCCTGAAGTTGAGCGAGCTTTTGTGCATATAGATTTCGAGTTTTCCCATAGGCCTGAACACAAGAGCAAG ATCTAA
AA sequence Show only first row Show all	>Potri.010G172800.4 pacid=42797179 polypeptide=Potri.010G172800.4.p locus=Potri.010G172800 ID=Potri.010G172800.4.v4.1 annot-version=v4.1 MARESGGGGTDYTTEDDNTHLLPPPASWRLDIDKFRLPRESHKHGSHDRVSSFSLDRLLPTSRKQRKVSEYYKKQERLLEGYNEMEAMTESGCFPGNPTE DEMKQLAKSERLAIHISNVANLLLFAAKVYASMESKSLAVIASTLDSLLDLLSGFILWFTSHAMKKPNHYHDYPIGKKRMQPVGIIVFASVMATLGLQIL LESGRQLVLKKGPRMDNGQEKWMIAIMVSVTVVKFLLMLYCRRFKNEIVRAYAQDHLFDVVTNSVGLITAVLAVRYYWWIDPTGAIIIALYTITTWARTV IENVWSLIGRTAPPEFLAKLTYLIWNHHKEIKHIDTVRAYTFGNHYFAEVDIVLPEDMVLNQAHNIGEDLQEKLEQLPEVERAFVHIDFEFSHRPEHKSK I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16310			Cation efflux family protein (...		Potri.010G172800 [exp]	0	1
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.017G099500 [exp]	3.74	0.9136
					Potri.012G110750 [exp]	4.89	0.8707
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G030125 [exp]	5.47	0.8902
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.014G132600 [exp]	5.47	0.8925
AT2G46150			Late embryogenesis abundant (L...		Potri.002G165100 [exp]	9.38	0.8859
AT2G24130			Leucine-rich receptor-like pro...		Potri.006G181200 [exp]	10.48	0.8839
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085400 [exp]	14.69	0.8772
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040132 [exp]	15.55	0.8673
AT1G05450			Bifunctional inhibitor/lipid-t...		Potri.010G085200 [exp]	16.30	0.8719
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.018G129000 [exp]	17.49	0.8225

Compare expression of checked genes

Potri.010G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.