Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16310 572 / 0 Cation efflux family protein (.1) AT1G79520 559 / 0 Cation efflux family protein (.1.2) AT2G39450 397 / 1e-136 ATMTP11 Cation efflux family protein (.1) AT3G58060 337 / 1e-112 Cation efflux family protein (.1) AT2G47830 56 / 4e-08 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172800 [exp] 677 / 0 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 535 / 0 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 532 / 0 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 513 / 0 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.008G049600 [exp] 437 / 2e-152 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 435 / 2e-151 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 342 / 1e-114 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.003G215600 [exp] 336 / 1e-112 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 333 / 4e-111 AT3G58060 540 / 0.0 Cation efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001768 [exp] 504 / 3e-177 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 501 / 1e-176 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 446 / 9e-156 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 444 / 5e-155 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 357 / 2e-120 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 353 / 4e-119 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10000061 [exp] 155 / 7e-45 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016242 [exp] 90 / 9e-22 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10040922 [exp] 56 / 5e-08 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family PF16916 [poplar] [flax] ZT_dimer Dimerisation domain of Zinc Transporter
Representative CDS sequence Show only first row Show all	>Potri.010G172900.2 pacid=42797443 polypeptide=Potri.010G172900.2.p locus=Potri.010G172900 ID=Potri.010G172900.2.v4.1 annot-version=v4.1 ATGGAGGCGGTTTTGGGGATTCTTGAACGCGTAGAATCTGCACAAGTTACAGCCACCACCATTTTCATTTTTCTCTCCTGGCAAAAAAGTTACATGGAAG GAGATCAGAGCGATCACAAAAAGAATGTTAGAGAAGATTATAGAGCAGAGGCTCTTCCATTTGCAAAATCAGCGGTAGAAGAGGACCCATTGTCATGGCG ACTCAGTCTCGACAGTTTTCGCATAGAAAAGCAAGACACTGATCGTGGTCGTCACACTTGGTCCTCTTTCCTGCACACATCATCAAGGAAGCAACGCAAG GTTTCTGAATACTACAAGAAACAAGAAAGGCTCCTTGAAGGGTATAATGAGATGGAGGCCATGACTGAATCGGGTTCTTTCCCTGGAAATCCGACAGAGG ATGAAATGAAGCAGCTGGCAAAGAGTGAGCGACTGGCAGTTCATATTTCCAATCTAGCTAACTTGCTACTATTTGCAGCAAAGGTTTATGCTTCTATGGA GAGCAAATCTTTGGCAGTTATTGCTTCAACTCTGGACTCCCTACTGGATCTCTTGTCGGGATTTATTTTGTGGTTCACTTCCTATGCCATGAAAAAGCCA AACCATTACCACCACTATCCAATTGGAAAGAAACGGATGCAGCCCGTGGGCATCATTGTCTTTGCATCTGTAATGGCGACACTGGGGTTGCAAATTCTAC TTGAGTCTGGTCGGCGGCTCGTTTTGAAGAAAGGGCCTGAAATGGATAAGGGGCAGGAGAACTGGATGATTGCCATAATGGTTTCTGTCACGGTAGTGAA GTTTCTGCTAATGCTCTATTGTCGAAGATTTAAGAATGAAATTGTCAGAGCCTATGCTCAAGATCATCTTTTTGACGTCGTAACAAATTCAGTTGGTTTG ATAACAGCCGTCCTAGCAGTCCGATATTACTGGTGGATCGATCCTACTGGAGCTATTATAATAGCGTTGTATACCATCAACACATGGACCAGAACAGTTA TCGAGAATGTATGGTCTTTGATTGGAAGAACTGCCCCGCCTGAGTTTCTAGCAAAGCTAACATACCTGATATGGAATCACCATAAAGAGATCAAGCACAT TGACACAGTTAGGGCATACACTTTCGGTAACCATTACTTTGCAGAGGTTCACATAGTCTTGCCAGAAGACATGGTTTTGAACCAAGCACATAATATCGGC GAGGATCTCCAAGAGAAGCTTGAGCAATTACCTGAAGTTGAGCGAGCTTTTGTGCATATAGATTTCGAGTTTTCCCATAGGCCTGAACACAAGAGCAAGT TCTAA
AA sequence Show only first row Show all	>Potri.010G172900.2 pacid=42797443 polypeptide=Potri.010G172900.2.p locus=Potri.010G172900 ID=Potri.010G172900.2.v4.1 annot-version=v4.1 MEAVLGILERVESAQVTATTIFIFLSWQKSYMEGDQSDHKKNVREDYRAEALPFAKSAVEEDPLSWRLSLDSFRIEKQDTDRGRHTWSSFLHTSSRKQRK VSEYYKKQERLLEGYNEMEAMTESGSFPGNPTEDEMKQLAKSERLAVHISNLANLLLFAAKVYASMESKSLAVIASTLDSLLDLLSGFILWFTSYAMKKP NHYHHYPIGKKRMQPVGIIVFASVMATLGLQILLESGRRLVLKKGPEMDKGQENWMIAIMVSVTVVKFLLMLYCRRFKNEIVRAYAQDHLFDVVTNSVGL ITAVLAVRYYWWIDPTGAIIIALYTINTWTRTVIENVWSLIGRTAPPEFLAKLTYLIWNHHKEIKHIDTVRAYTFGNHYFAEVHIVLPEDMVLNQAHNIG EDLQEKLEQLPEVERAFVHIDFEFSHRPEHKSKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16310			Cation efflux family protein (...		Potri.010G172900 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256600 [exp]	13.00	0.8839	Pt-PME2.7
					Potri.003G156000 [exp]	15.09	0.8809
AT3G03430			Calcium-binding EF-hand family...		Potri.014G030800 [exp]	18.81	0.8794
AT5G16740			Transmembrane amino acid trans...		Potri.002G233100 [exp]	22.80	0.8081
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.002G014900 [exp]	23.49	0.8736
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.010G105200 [exp]	24.53	0.8709
AT3G25400			unknown protein		Potri.010G069700 [exp]	26.64	0.8630
AT3G62290		ATARFA1E	ADP-ribosylation factor A1E (....		Potri.001G301200 [exp]	29.41	0.8723
AT4G05050		UBQ11	ubiquitin 11 (.1.2.3.4)		Potri.006G045300 [exp]	33.58	0.8675
					Potri.003G217600 [exp]	34.08	0.8583

Compare expression of checked genes

Potri.010G172900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.