Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79510 357 / 2e-125 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) AT1G16320 350 / 2e-122 Uncharacterized conserved protein (DUF2358) (.1) AT2G46220 203 / 5e-65 Uncharacterized conserved protein (DUF2358) (.1) AT3G04890 40 / 0.0007 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083400 [exp] 212 / 3e-70 AT1G79510 192 / 1e-62 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.014G092200 [exp] 187 / 8e-59 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009597 [exp] 288 / 6e-98 AT1G79510 284 / 2e-96 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10001766 [exp] 286 / 4e-97 AT1G79510 281 / 3e-95 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10010135 [exp] 191 / 7e-60 AT2G46220 254 / 2e-85 Uncharacterized conserved protein (DUF2358) (.1) Lus10012651 [exp] 190 / 1e-59 AT2G46220 256 / 4e-86 Uncharacterized conserved protein (DUF2358) (.1) Lus10027002 [exp] 43 / 0.0002 AT1G65230 328 / 5e-113 Uncharacterized conserved protein (DUF2358) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF10184 [poplar] [flax] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Potri.010G173000.1 pacid=42799629 polypeptide=Potri.010G173000.1.p locus=Potri.010G173000 ID=Potri.010G173000.1.v4.1 annot-version=v4.1 ATGGCTTTTCTTTTACCAAACCTCTCCCCTTCTCTCCTTATCAATTCCAAATCCTTCAAAGATAGAGAGAAACCAGTCCTGTACCAAACCCAAACTTTAC CCTCTCATTATCAAACCACCACCACCACAACATCAACAACAACTAAAAAACCCACCAATACTAACTCTTCCATGCCCCCTCCACTGCAGGTTAAGACTCC ACCGGGTGCACAGGATAAGGAGCAGCACCAAAGAGATGAGTTTTATGTAAACCTTGGCCTAGCTGTGCGGACACTCCGTGAGGATTTGCCTGTGTTATTC ACAGAAGACCTCAATTACGACATCTATAGGGATGATATCACATTTATCGACCCTCTGAATACTTTCACTGGAATTGACAACTATAAATTGATCTTTTGGG CATTGAGATTTCATGGTAAAATGTTGTTTAGAGAGATTTCACTCGAGGTTTATAGGATTTGGCAACCCTCAGAGAATGTGATATTGATTAGATGGAACTT AAAGGGTGTTCCTAGGGTCCCATGGGAGGCCAAGGGAGAGTTTCAGGGCACTTCAAGGTATAAATTGGATAGAAATGGAAAAATTTATGAACATAAAGTG GATAATTTGGCCTTCAATTTTCCTCAGCAGCTCAAACCTGCTGCTTCTGTATTGGATTTGGTGGCTGCTTGCCCTGCTAGTCCTAATCCAACGTTTTTGT GGGGACCTGCGGACGTCTACTCGTCTTCATGGGTGGAATTCTATCGTGCTGTTAGAGAGACTTTGGACCGGGAGAACAGTACAAATTGCTTTTGCAAGAT GGCTACTTGTTCATAG
AA sequence Show only first row Show all	>Potri.010G173000.1 pacid=42799629 polypeptide=Potri.010G173000.1.p locus=Potri.010G173000 ID=Potri.010G173000.1.v4.1 annot-version=v4.1 MAFLLPNLSPSLLINSKSFKDREKPVLYQTQTLPSHYQTTTTTTSTTTKKPTNTNSSMPPPLQVKTPPGAQDKEQHQRDEFYVNLGLAVRTLREDLPVLF TEDLNYDIYRDDITFIDPLNTFTGIDNYKLIFWALRFHGKMLFREISLEVYRIWQPSENVILIRWNLKGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKV DNLAFNFPQQLKPAASVLDLVAACPASPNPTFLWGPADVYSSSWVEFYRAVRETLDRENSTNCFCKMATCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	0	1
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.006G087200 [exp]	1.00	0.9663	Pt-DFR1.3
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	2.44	0.9616
AT5G36930			Disease resistance protein (TI...		Potri.013G098100 [exp]	3.87	0.9525
AT1G48450			Protein of unknown function (D...		Potri.015G031200 [exp]	4.47	0.9548
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.005G079600 [exp]	5.65	0.9472	Pt-ACT11.10
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	6.00	0.9508
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	6.00	0.9562
AT5G36930			Disease resistance protein (TI...		Potri.013G097050 [exp]	6.48	0.9484
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	7.48	0.9378
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088680 [exp]	8.48	0.9387

Compare expression of checked genes

Potri.010G173000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.