Plant FIBer expression Database

Potri.010G173050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G173050.1 pacid=42797431 polypeptide=Potri.010G173050.1.p locus=Potri.010G173050 ID=Potri.010G173050.1.v4.1 annot-version=v4.1
ATGACATTTCCCCAATTTACCATCCACCGTCATAGCTCACAGACTACAGAGTCTTTTGACCCCCTGTCTCGTTTCTCAAATGACTTGATTGCTCTGCTTG
AAACACGAGAAAGTTCTGGCTTTTCAAACTTCACCGTTAATTTAGGGCATCTTCTCTCGAACTCAAGCATATTCTATTTCCACGATCCAACTTCTTGTAA
GAAGGAAATTCATGAGTGCAATCCCCCGCAAGCATGTCAGACTAAGGAACAATTCCCCACACCGAGACGCTATATGTTGATTTTGTCACTACCATGGAAC
AAGAGTTGCTCAGGGAAACAACAGATGAAGACGAGAACTCTTCCTTTCTCTGATTACTGGCGGAGTTTCAGAGAGAAGGATCCTCCAGGAAGACCTGGGA
AAGACACTGAATGGACAGAGAATGAAAGTTTCGGAGAATAA
AA sequence
>Potri.010G173050.1 pacid=42797431 polypeptide=Potri.010G173050.1.p locus=Potri.010G173050 ID=Potri.010G173050.1.v4.1 annot-version=v4.1
MTFPQFTIHRHSSQTTESFDPLSRFSNDLIALLETRESSGFSNFTVNLGHLLSNSSIFYFHDPTSCKKEIHECNPPQACQTKEQFPTPRRYMLILSLPWN
KSCSGKQQMKTRTLPFSDYWRSFREKDPPGRPGKDTEWTENESFGE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G173050
[exp]
0 1
AT4G38470 STY46 serine/threonine/tyrosine kina... Potri.002G015400
[exp]
2.00 0.8230
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700
[exp]
2.23 0.8280
AT4G09153 LCR36 low-molecular-weight cysteine-... Potri.001G401800
[exp]
20.71 0.7696
AT5G16530 PIN5 PIN-FORMED 5, Auxin efflux car... Potri.019G052800
[exp]
28.42 0.7916 PIN12,PIN9.1
AT5G47780 GAUT4 galacturonosyltransferase 4 (.... Potri.006G001100
[exp]
32.24 0.7246
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Potri.008G072800
[exp]
57.49 0.7623
AT4G24975 Plant self-incompatibility pro... Potri.017G144361
[exp]
168.28 0.7314
Potri.014G151101
[exp]
210.52 0.7099

Potri.010G173050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.