Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40980 750 / 0 Protein kinase superfamily protein (.1) AT5G05080 82 / 3e-17 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083300 [exp] 1357 / 0 AT2G40980 745 / 0.0 Protein kinase superfamily protein (.1) Potri.004G137600 [exp] 624 / 0 AT2G40980 523 / 1e-177 Protein kinase superfamily protein (.1) Potri.016G024800 [exp] 100 / 4e-23 AT5G05080 372 / 1e-131 ubiquitin-conjugating enzyme 22 (.1.2) Potri.006G026900 [exp] 100 / 4e-23 AT5G05080 376 / 4e-133 ubiquitin-conjugating enzyme 22 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031009 [exp] 1041 / 0 AT2G40980 764 / 0.0 Protein kinase superfamily protein (.1) Lus10035407 [exp] 1034 / 0 AT2G40980 760 / 0.0 Protein kinase superfamily protein (.1) Lus10015685 [exp] 533 / 9e-179 AT2G40980 444 / 4e-146 Protein kinase superfamily protein (.1) Lus10037692 [exp] 527 / 9e-177 AT2G40980 457 / 5e-152 Protein kinase superfamily protein (.1) Lus10038982 [exp] 82 / 1e-16 AT5G05080 310 / 1e-105 ubiquitin-conjugating enzyme 22 (.1.2) Lus10010432 [exp] 66 / 2e-13 AT5G05080 81 / 1e-20 ubiquitin-conjugating enzyme 22 (.1.2) Lus10027282 [exp] 48 / 2e-05 AT5G05080 284 / 1e-95 ubiquitin-conjugating enzyme 22 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G173100.4 pacid=42797138 polypeptide=Potri.010G173100.4.p locus=Potri.010G173100 ID=Potri.010G173100.4.v4.1 annot-version=v4.1 ATGGCGACATATGAAGATTTGCCGCCCAGCATGATAAAGAGACTTGCGAAGGAATTGAAGAATCTTGATAAATCCCTGCCCAAGGGCATTTCTGTAGGGA TAAATGATGATGATTTTTCAGTCTCAGAAGCTGATATTGAAGTTCCAGCAGTAACTGCAAATGAAAATAATGTTTCTCGCATGAAGCAGCTATTGTCTCG CGACTTTCGACGCCCTCCTTTAAAAGGTAGATCCCCAGACCAAGAATCGATAGGGTCTGAAACAAAAAGATCTAGTGTATCATCTGGCAGCAGGTCTCAT AACCGCAAGGAGTTTCTTTCTAGGTTCGTGGACAGTCAAACTCTGACAGCCAGGCTTGAAGACTGGTTTGAATTGATATCAGAAAATTCTGGACAAAAAA AGTCTGCATTTGATGTTCCTTTTGAGTTGATAGAACTTCAAAAGTTTGATTATGCATTGGAAGGGGTTTCATTTCAGCAGCTGGTTCGAATGCCCAGTGC TGTTTATGCTTCAACATCTGATGCTGTGGAAGCAACTGCTTATCTTGCTATTGAAGACTTTCTACATGCAAGTGTGAAGGGCTTGTGGGAGGCATTTTGG AGTCAGGATGATCCTATGCCTTTCTCAGTTGCTTGTCTATACAATGAAAACTTGAAATTCTACCAGGCTGAGAAAGCAATAGGTAATGGAAAACTTGGTG GTCTTTGTGCCACTGGTGTATTACTTAACAACCCTAGACATCCACATGGAAAGTGGGACCATATTCTTGAATTGGCCCTTCTAAGGCCTGATATTGGAAG TGTTGCTGCGGGAAGTGACCGGCAACTCTCTTTATCTGTTCTGGGCGAGGCTCTCTTCTATGCTATACGCATGCTACTATCAAGAAGCTTGAGCAGATTG AATTTTTCTGAGAGTCCAAATTGTGCCTATGTTCTTCTTGTTGATTCTCAACATGGCGGGGTTGTAAAAGTTGAAGGAGATGTAGATAAATTGGAGTTTG ATGTGAATAATGTTTACAACTGTTCCGTGGACTGGATAAAAAAACACTGTAAAGTCACAGTCTCTCCTGTTGATAGGATCTGGAACAAACTTGGAAATGC CAACTGGGGAGACATTGGTGCTCTACAGGTACTTTTTGCTACTTTCCATTGTATCGTGCAGTATTCAGGGATGCCTAAGCACTCGATTGAAGATTTAGCA GCTGATCATGGTCCTCGCCTCCTAACAAGAAGAGTGGCAAGGCAGTTAGGGGATTCCAGAGTTAATGGCCATGGACTATTCCGGTTTCAGCAACGGAGTG TTTCTCCTGAAATTGTTGAAGTTCCGGATGAATCTATCAAAATAAAGTCTGAAGAGTTGATAATGAAGCTGGATGTAGGATCTGTACTATGGTTGGAAGA CTCTGAATGTCAAAAAGGTTATCAGATCAATGATGTCCTGCACAATAATGAACTACGGTATTACATAGCATCGCCTGTTAATGATCCTGGTAAATCTTTG TATCTTTATGTCGGTTCCCATCCTTCTCAACTGGAACCAGCATGGGAAGATATGAATTTGTGGTATCAAGTCCAAAGACAAACTAAAATATTGGCTATTA TGAGGCAGAAAGGTCTGTCTAGTAAATATCTACCACAATTGAGTGCTTCTGGCAGGATTGTTCATCCTGGCCAGTGTCGAAAACCCAGCTCAGGTGGGAA CTGTGATCACCCATGGTGTGGTACCCCAATTCTCGTTACCAGTCCAGTTGGTGAGACAGTTGTTGATATGGTAAATGCTGGCAGATTTGGTTTGGATGAG GCTATCAGGTGTTGTCATGATTGCGTATCTGCACTTTCTATGGCTTCTTCCGCTGACATTCGGCACGGAGACATTCGGCCGGAGAACATAATTTGTGTCG TGTCTGGTGGGAGGCATCCTTATTTTGTCCTTGTTGGTTGGGGTCATGCGATTCTTGAAGACAGGGATCGCCCTGCAATGAATCTCCATTTTTCATCTAC TTATGCACTGCAGGAGGGAAAATTGTGCTCAGCTTCGGATGCAGAGAGCCTGGTATACGTGCTCTACTTTGCCTGCGGTGGAGCTTTGCCTGATTTAGAT TCGGTTGAGGGGGCACTGCAATGGAGAGAGAACTCATGGTCAAGGAGATTGATTCAGAAGAAGCTTGGTGAGTTATCAACTGTGTTGAAAGCTTTTGCTG ATTATGTAGACAGTCTTTGTGGGACACCATATCCTATAGATTATGACATATGGCTAAGAAGATTAAGGAGAAATATTCACGATGGTGACCATGGAAAGCA AGTTGACACATCTGGCTAG
AA sequence Show only first row Show all	>Potri.010G173100.4 pacid=42797138 polypeptide=Potri.010G173100.4.p locus=Potri.010G173100 ID=Potri.010G173100.4.v4.1 annot-version=v4.1 MATYEDLPPSMIKRLAKELKNLDKSLPKGISVGINDDDFSVSEADIEVPAVTANENNVSRMKQLLSRDFRRPPLKGRSPDQESIGSETKRSSVSSGSRSH NRKEFLSRFVDSQTLTARLEDWFELISENSGQKKSAFDVPFELIELQKFDYALEGVSFQQLVRMPSAVYASTSDAVEATAYLAIEDFLHASVKGLWEAFW SQDDPMPFSVACLYNENLKFYQAEKAIGNGKLGGLCATGVLLNNPRHPHGKWDHILELALLRPDIGSVAAGSDRQLSLSVLGEALFYAIRMLLSRSLSRL NFSESPNCAYVLLVDSQHGGVVKVEGDVDKLEFDVNNVYNCSVDWIKKHCKVTVSPVDRIWNKLGNANWGDIGALQVLFATFHCIVQYSGMPKHSIEDLA ADHGPRLLTRRVARQLGDSRVNGHGLFRFQQRSVSPEIVEVPDESIKIKSEELIMKLDVGSVLWLEDSECQKGYQINDVLHNNELRYYIASPVNDPGKSL YLYVGSHPSQLEPAWEDMNLWYQVQRQTKILAIMRQKGLSSKYLPQLSASGRIVHPGQCRKPSSGGNCDHPWCGTPILVTSPVGETVVDMVNAGRFGLDE AIRCCHDCVSALSMASSADIRHGDIRPENIICVVSGGRHPYFVLVGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYVLYFACGGALPDLD SVEGALQWRENSWSRRLIQKKLGELSTVLKAFADYVDSLCGTPYPIDYDIWLRRLRRNIHDGDHGKQVDTSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40980			Protein kinase superfamily pro...		Potri.010G173100 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Potri.004G217700 [exp]	2.23	0.6737
AT5G47940			unknown protein		Potri.001G265100 [exp]	13.26	0.6146
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	14.49	0.6255
AT3G05545			RING/U-box superfamily protein...		Potri.013G015600 [exp]	15.74	0.5806
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	16.24	0.6455
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	16.37	0.6312
AT4G39870			TLD-domain containing nucleola...		Potri.007G092700 [exp]	24.97	0.5940
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.008G002100 [exp]	28.98	0.6254
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	30.74	0.6112
AT3G58900			F-box/RNI-like superfamily pro...		Potri.017G119200 [exp]	34.72	0.6232

Compare expression of checked genes

Potri.010G173100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.