Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16330 477 / 8e-161 CYCB3;1 cyclin b3;1 (.1) AT5G06150 216 / 4e-63 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 205 / 2e-59 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT1G76310 201 / 1e-57 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 201 / 2e-57 CYCB2;3 Cyclin B2;3 (.1) AT2G26760 197 / 1e-56 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT4G37490 189 / 2e-53 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT2G17620 184 / 2e-51 CYCB2;1 Cyclin B2;1 (.1) AT4G35620 183 / 4e-51 CYCB2;2 Cyclin B2;2 (.1) AT5G11300 165 / 1e-44 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083200 [exp] 926 / 0 AT1G16330 497 / 1e-168 cyclin b3;1 (.1) Potri.016G033000 [exp] 218 / 7e-64 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.001G272000 [exp] 214 / 7e-63 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.002G010000 [exp] 213 / 3e-62 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 209 / 1e-60 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G066600 [exp] 208 / 2e-60 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.006G035200 [exp] 207 / 9e-60 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.005G100000 [exp] 205 / 3e-59 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 194 / 1e-55 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 423 / 2e-137 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10012261 [exp] 218 / 3e-63 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 213 / 3e-62 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10026803 [exp] 199 / 5e-57 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10036080 [exp] 196 / 4e-56 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10009596 [exp] 186 / 4e-51 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10003800 [exp] 180 / 9e-50 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10013226 [exp] 179 / 1e-49 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 177 / 4e-49 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10039033 [exp] 171 / 2e-46 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G173200.6 pacid=42798411 polypeptide=Potri.010G173200.6.p locus=Potri.010G173200 ID=Potri.010G173200.6.v4.1 annot-version=v4.1 ATGGTGGCTGCTAAAGGAAAATTCAGCGTGGGGATCAACCGTGTAGCTGAAGATGCCCATACTTCCAGAACACGTGTTAGAACTTTTAAAGTCTATTCAG AAAACGAAAAGATGAAGGATGCTGCTAGCATTAAATCTGCCCGAGATAATCCTCTTCCTGCAAGAAGGATATCCAACAAAGAAGATTCTCTTGCCATAAC AAGTGATTCAAAGTTGCCCTTAACATGTAATATGAAGGGAAGTTCGAAAATTGTGGTGCAGAACAAAGGCAAACATGACACATCTAGACTGACTGTAAAT CAAAATGCCAGAAGAAAAGCATTGGCTGATGTAAGCAATGTGCAGAGTAGCTGTGCAAGGAATGCGGCATATGGTGGTTTGAAATCAGTGATTTCAGGCG GTACAGGCTCTAGGACTGTGAATCTTTCATCAAGAAAATCTGCAACGGGAAAAATGAAGGATGATACAAGTAGAAAGGCTGGTGACTTTCATGCTTCTAG AAAAGTAGGTGACAAAGATCCAAGGGCCTCTTTAGATGATCAGAAGACCAACACCAAGAATCATGACCGTGAATTTGGCATTAATAAGAGCAGGAGGAAT GCAGGGAATTTAGTTGCAGCGATGAGGAAGTCTCTGCCAGTGCTGAAGAGGGTGAGCCATGCAGATGCAAGCAATGCAAAGGAGAATGATGAAAACTTTG AGAAAACTAAGAATATTAGTGGGTTTCCTGTTAAGGTTAAAGTGGGTAAGAAAGTAGTATCTCAGGGTGGCGTGGGTAGGAGCCATCTATGGAGAAATAG AGTGAGTGATGGCTTCATATTAATGGCTCCCAGGGATCAAATTAATGCTGATGCCCGTGTATCCAGAAAATCTGTCAGGCCAATACTAAAGACTGAAATT AACCACAAGACCTCAAGATCAAAGTGCATCTCTAGTTCAAACAAGTCCGAGTGCATTGCTGCTATATCATCAAAGAAAAAAGAATCTGCCGCGTCTTGTC CAGAAAACATGCCGTTGGTCGCCCATGAAGAAGTTACTCAAGGAGAACCTTCACCTGACAGCAACAACAAGTCAGGCGCTGATAACAAATCAAATGTCAT CACCATAAGAAAATCAAGTCGAAGGAGATCTTATACATCTTTATTAATGACAGGATCAAAGTTACTAGAGGAGCATGGTGAAGTTATCGAGCAGGAAAAG CTACCAAGTATAGATGATACTTTCAATCAACTGGAAGTTGCTGAGTATGTTGACGAGATATACGAGTACTATTGGGTTTTGGAGGTGCAGAATTTATGTC TGGAAAATTACATGGCAATTCACACAGAAATTACACCTCAAATGCGGGGCATAGTCATCAACTGGCTGATTGAAGTACACTTCAAATTTGAATTAATGCC GGAAACACTTTATCTAATGGTTACATTGTTAGATCGATACCTATCTCAAGTCGAAATTAAGAAGAGTGAACTGCAGTTGGTTGGTCTTACAGCACTGCTT CTGGCATCAAAATACGAAGATTTTTGGCATCCTAGGATCAAAGATTTAATTAGCATCTCGGCTGAGTCATACACGAGAGGCCAAATGCTTGTGATGGAGA AGTTTTTTCTTAAGAAGTTGAAGTTTCGTCTAAATGAGCCGACTCCGTATGTTTTCATGTTGAGGTTTCTCAAGGCTGCTCAAACAGACCAGAAGCTTGA GCATTTAGCATTCTACCTCATCGAACTCTGCTTGGTGGAATATAAAGCTTTAAAGTTCAAACCTTCAATGCTATGTGCATCAGCTATCTATGTTGCTCGG TCTACCTTGCAAGTATCTCCAGCTTGGACTCCTTTGCTTACCAGACATACACATTATCAAGTCTCCCAAATCAGGGACTGTGCTGAGATGATATTGAGAT TTCAAAAGGCTGCAAGAACATCACAGTTGAGAGTTACGTACGAGAAGTACATGAGGCCTGATCTCAGTGGCGTTGCAGCAATAAAACCCTTGAATGAACT TCCACTTTGA
AA sequence Show only first row Show all	>Potri.010G173200.6 pacid=42798411 polypeptide=Potri.010G173200.6.p locus=Potri.010G173200 ID=Potri.010G173200.6.v4.1 annot-version=v4.1 MVAAKGKFSVGINRVAEDAHTSRTRVRTFKVYSENEKMKDAASIKSARDNPLPARRISNKEDSLAITSDSKLPLTCNMKGSSKIVVQNKGKHDTSRLTVN QNARRKALADVSNVQSSCARNAAYGGLKSVISGGTGSRTVNLSSRKSATGKMKDDTSRKAGDFHASRKVGDKDPRASLDDQKTNTKNHDREFGINKSRRN AGNLVAAMRKSLPVLKRVSHADASNAKENDENFEKTKNISGFPVKVKVGKKVVSQGGVGRSHLWRNRVSDGFILMAPRDQINADARVSRKSVRPILKTEI NHKTSRSKCISSSNKSECIAAISSKKKESAASCPENMPLVAHEEVTQGEPSPDSNNKSGADNKSNVITIRKSSRRRSYTSLLMTGSKLLEEHGEVIEQEK LPSIDDTFNQLEVAEYVDEIYEYYWVLEVQNLCLENYMAIHTEITPQMRGIVINWLIEVHFKFELMPETLYLMVTLLDRYLSQVEIKKSELQLVGLTALL LASKYEDFWHPRIKDLISISAESYTRGQMLVMEKFFLKKLKFRLNEPTPYVFMLRFLKAAQTDQKLEHLAFYLIELCLVEYKALKFKPSMLCASAIYVAR STLQVSPAWTPLLTRHTHYQVSQIRDCAEMILRFQKAARTSQLRVTYEKYMRPDLSGVAAIKPLNELPL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.010G173200 [exp]	0	1
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.009G018700 [exp]	5.74	0.7559
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	12.00	0.6887
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Potri.016G100600 [exp]	14.28	0.6463	FHY1.2
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.003G173900 [exp]	24.73	0.7002
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	30.69	0.7142
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	35.79	0.6808
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Potri.001G329300 [exp]	48.00	0.6600
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Potri.015G132300 [exp]	50.86	0.6987	PBS2.1
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.002G203600 [exp]	51.84	0.6698
AT3G15690			Single hybrid motif superfamil...		Potri.003G061400 [exp]	78.74	0.6255

Compare expression of checked genes

Potri.010G173200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.