Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79490 1295 / 0 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 186 / 7e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 177 / 7e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 151 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 150 / 5e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 148 / 1e-36 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16010 145 / 6e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G31400 143 / 6e-35 GUN1 genomes uncoupled 1 (.1) AT5G02860 139 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 138 / 2e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066400 [exp] 179 / 1e-46 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.001G180000 [exp] 161 / 3e-41 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G264800 [exp] 159 / 7e-40 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G014100 [exp] 156 / 6e-39 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 149 / 8e-37 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 149 / 9e-37 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 142 / 2e-34 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 141 / 2e-34 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 141 / 2e-34 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037515 [exp] 1310 / 0 AT1G79490 1296 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002871 [exp] 1308 / 0 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037517 [exp] 1305 / 0 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 181 / 5e-47 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10043417 [exp] 156 / 6e-39 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011464 [exp] 150 / 9e-38 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002107 [exp] 149 / 1e-36 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 148 / 2e-36 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 142 / 1e-35 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 139 / 1e-33 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G173400.2 pacid=42797570 polypeptide=Potri.010G173400.2.p locus=Potri.010G173400 ID=Potri.010G173400.2.v4.1 annot-version=v4.1 ATGTTTCACATTCATCGCAGTAGACTCTACCCTAGAAATCTTTATACCCTCACCAAAAACCATAGCTCCAGGTCTTCATTTCTAACCCCCAATGTCCAAA ACTCTAATTCACACACAAATGCAGCAGTTAATAGTTTGAATAAGTTCAGTTTTTTCAGTGCTCTAATGGGTCTCAATTCAATTTCCCCAAAGGTATCCCC ATCAAAAAGCCCCAATTTGGTTAGTAACGGAGGTCATGTTAAAGCCAATAGCTTTGTGAGAAATTACTGTGCTGGAAAGAATGGTGAAGCTGGGTCTGGT GAATGGACTGAGGATATAGAATATTTAGATGAGTCAGGGAGTGTTATTTATAGTGGTAAAGGTATAAGGTCAGTTGAGCCGGGAGTTGATGACCATGTTA TGATTGGTGGGCTAAAGAAGCCGATTTTGAATGCTTCTGCCGTTGCAAAGATAGTTGAGGTTGTTAAGAGGTGGAAATGGGGGCCAGAATTGGAGACCCA ATTGGACAAGTTACAGTTCGTGCCAAATATGACTCATGTAGTTCAAGCTTTGAAGATTATTAATGAGAGTGATGCGTTGTTGAGTTTGTTCAAATGGGCT AAGAGGCAAACTTGGTATGTGCCAAATGATGAGTGTTATGTGATGTTGTTTGATGGGTTGAATCAAAGTAGAGATTTTGATGGGATTCAGTCTTTGTTTG ATGAGATGGTTTGTGATTCAATCAAGAGTGCAACTCAATTTAGTGCTTATAACAGGGTACTCAAGTATTTGGCTAAGGCAGAGAAGTTGGAGGTGTCATT TTGTTGTTTCAAGAAGGTTCAGGATTCAGGCTGTAAAATTGATACAGAAACGTATAATATACTCATGAAGTTGTTTTTGAATAAGGGCTTGCCATATAAG GCATTTGAGATATATGAGACCATGGAAGCAGCCCATTGTTCATTGGATGTCTCAACTTATGAGCTGATGATACCAAGCTTGGCAAAATCAGGTCGTTTGG ATGCTGCTTTTAAGCTTTTCCAAGAGATGAAAGAAAGGAACTTTCGCCCAAGCCTTGGAATTTTTTCCTCGCTTGTTGACTCAATGGGGAAAGCAGGGAG GTTGGAGACATCGATGAAGGTTTACATGGAAATGCAAGGTTTAGGGCTCAGGCCATCTGCTATCATGTATGTTTCCTTGATTGAGTCGTACACCAAGGCT GGGAAATTGGATGCTGCTCTCAGGCTTTGGGATGAGATGAAGATAGCTGGCTTTAGGCCTAACTTTGGGTTGTATACATTAATAATCGAATCACATGCTA AGTCAGGGAAGCTCGATATTGCAATGTCCATCTTTCGAGATATGGAGAAGGCTGGATTTCTACCCACCCCATCCACCTATTCATCTCTTCTTGAAATGCA TGCTGCTTCTGGACAAGTAGATGCTGCTATGAAGCTGTACAATTCGATGACCAATGCAGGTTTGAGGCCAGGTTTGAGCACATACACTGCCCTTTTGACT CTCTTGGCTCATAAGAAGCTTGTGGATGTGGCTGCCAAAATTTTACTTGAGATGAAGGCTATGGGATTTTCTGTTGATGTGAGTGCCAGTGATGTTTTAA TGGTTTACATTAAGGATGGTTCTGTTGATCTTTCTTTGAGGTGGCTGCGTTTCATGAGTTCATCAGGGATAAGAACGAATAATTTTATAATCAGGCAGTT ATTTGAGTCTTGCATGAAGAATGGTTTATATGAATCAGCCAAGCCTCTCCTAGAGACTTATGTGAACTCTGCTGCAAAAGTGGATCTCATACTTTACACA TCAATTCTTGCCTATCTTGTTCGATGCCAAGAAGAGCAGAATGAGAGGCATCTGATGGCAATCCTTAGTGCTACGAGACATAAGGCGCATGCTTTTATGT GCGGGCTCTTCACTGGCCCGGAACAGAGGAAACAACCAGTTTTATCCTTTGTGAGGGAGTTTTTTCAGGGCATTGATTATGAGTTGGAAGAGGGAGCTGC AAAGTATTTTGTGAATGTTCTGCTCAATTACCTTGTTCTCATGGGGCAGATAAACCGAGCCCGATGTGTTTGGAAAGTTGCTTATGAGAATAAGCTTTTT CCAAAAGCTATTGTGTTTGATCAGCATATTGCTTGGTCCCTTGATGTCAGGAACCTGTCTGTGGGAGCTGCCCTTGTAGCGGTTGTGCATACTCTCCATA GGTTCAGAAAGCGCATGCTGTACTATGGCGTCATACCAAGGCGGATCAAATTGGTTACAGGACCAACTCTACGGATTGTTGTTGCGCAGATGTTGAGCTC CGTGGAATCCCCATTTGAAGTTAGCAAGGTGGTTCTAAGGGCCCCTGGCGACTCTGTTATGGAGTGGTTCAAGAAACCAATTGTTCAGCAATTTCTTTTG AACGAGATTCCCTCAAGGGCAGACATACTCATGCACAGGCTAAACATACTTTTTCCTACTTCTGCACCTGAAATTAGATCACTGTCCCCTCCGAAACCAC TAATTTCTGCGAAGGCTGTGTAA
AA sequence Show only first row Show all	>Potri.010G173400.2 pacid=42797570 polypeptide=Potri.010G173400.2.p locus=Potri.010G173400 ID=Potri.010G173400.2.v4.1 annot-version=v4.1 MFHIHRSRLYPRNLYTLTKNHSSRSSFLTPNVQNSNSHTNAAVNSLNKFSFFSALMGLNSISPKVSPSKSPNLVSNGGHVKANSFVRNYCAGKNGEAGSG EWTEDIEYLDESGSVIYSGKGIRSVEPGVDDHVMIGGLKKPILNASAVAKIVEVVKRWKWGPELETQLDKLQFVPNMTHVVQALKIINESDALLSLFKWA KRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDEMVCDSIKSATQFSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYK AFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKA GKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTYTALLT LLAHKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYIKDGSVDLSLRWLRFMSSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYT SILAYLVRCQEEQNERHLMAILSATRHKAHAFMCGLFTGPEQRKQPVLSFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLF PKAIVFDQHIAWSLDVRNLSVGAALVAVVHTLHRFRKRMLYYGVIPRRIKLVTGPTLRIVVAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLL NEIPSRADILMHRLNILFPTSAPEIRSLSPPKPLISAKAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	2.00	0.9330
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G106800 [exp]	4.47	0.9198
AT2G44020			Mitochondrial transcription te...		Potri.013G116700 [exp]	4.69	0.9118
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	4.69	0.9366
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	5.91	0.9252
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	6.70	0.9333
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	9.27	0.9343
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	9.48	0.9276
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	10.81	0.9240
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	11.61	0.9139

Compare expression of checked genes

Potri.010G173400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.