Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79480 162 / 2e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G67460 126 / 8e-33 O-Glycosyl hydrolases family 17 protein (.1) AT4G13600 107 / 5e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G04910 102 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT2G30933 98 / 1e-23 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G61130 94 / 1e-22 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G35740 91 / 2e-22 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G18650 92 / 8e-22 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT5G08000 91 / 1e-21 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT2G05790 95 / 2e-21 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082900 [exp] 202 / 5e-62 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.006G008200 [exp] 148 / 3e-42 AT1G79480 142 / 8e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.017G055700 [exp] 102 / 2e-25 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 100 / 9e-25 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 99 / 5e-24 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G007800 [exp] 97 / 8e-24 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.018G068600 [exp] 102 / 1e-23 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G353400 [exp] 100 / 1e-23 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 97 / 1e-23 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001764 [exp] 159 / 2e-45 AT1G79480 165 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10000278 [exp] 154 / 1e-43 AT1G79480 164 / 7e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10002466 [exp] 126 / 2e-34 AT5G67460 175 / 1e-53 O-Glycosyl hydrolases family 17 protein (.1) Lus10003803 [exp] 132 / 8e-34 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10010478 [exp] 122 / 2e-30 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10015259 [exp] 103 / 3e-25 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10040522 [exp] 101 / 6e-25 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 100 / 1e-24 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10021157 [exp] 100 / 1e-24 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 100 / 5e-24 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.010G173500.1 pacid=42797740 polypeptide=Potri.010G173500.1.p locus=Potri.010G173500 ID=Potri.010G173500.1.v4.1 annot-version=v4.1 ATGGAAATGAGCAAAGGTTGCAAGAAAGTCTGCGTTCTACTACTCTATTTGACGATTGCGGCTACTTCCTTCTTCGCTCATTGCGATGCAAGAAGATCAA TGCATCTATCCAGAGGTCCAGTGCATGCAAGAAGTTCAATAATCAAGCATGCACAAGAATTGAAAGTGACGAAGCGCTTTGACTTGGCTTCATTGCTTCT GCAAAAGGAAACAATGGATTCATCAAATGCTGGTCCCTATGTGAGCTCACCATTTACTTTGCCGCCTTATGATTCATTAGGACCAATTTCATTGCCCGAT AATGCCCCTCCAAATTGCATTTACCCCCCAAACACCCCACAACCACCTTCCACAGCAATTCCAACTCCAACGGGATCCATGCCATCTTCACCTCCACCAC CCTTCGCTTATCTACCACCGGTTTTTCCCATCTCAAACCCGCCTCCAAGCCCAACTGGTGAGGTACCTGGCCCACCCAGTTTTACCCCGATTCCAAATCC ACCTGAAATAGTACCTGGCCCACCCATTAACATTCCGGGCACACCGAAAGGAGCCGTACCTAGTCCTCCGGGTATAATCCCAGGCCCACCGGGATCAGTA CCTAGTCCAACCATTTATGTTCCAGGCCCACCAGAAGCTGTACCTGGTCCCCCTTATTATGAGCCTAGCCCACCAAGCTATACCCCTAGCCCGCCCACTT TTGTTCCATCTCCAACTGGATATGTTCCAAGCCCACGGGGTTTTCGCCCACCTGTGGTGTATCCACCTCCGACGGGGCCACCATCTCCAAGAAGAAGCCC ATACTCAGCCTTATGGTGTGTAGCCAAGCCTTCGGTGCCCGATCCGATCATTCAAGAAGCAATGAATTATGCTTGTGGGTCTGGGGCGGATTGTGACTCG ATTCAACCCAGTGGTTCATGCTTTGAACCCAATACATTGTTTGCACATGCTTCCTATGCTTTCAATAGTTACTGGCAGAGGACCCGAGTGGCTGGTGGTT CATGTTCATTTGGAGGGACTGCCATACTAGTCACCGTGGATCCAAGCTATGACGGTTGTCATTTTATCTACGGGTGA
AA sequence Show only first row Show all	>Potri.010G173500.1 pacid=42797740 polypeptide=Potri.010G173500.1.p locus=Potri.010G173500 ID=Potri.010G173500.1.v4.1 annot-version=v4.1 MEMSKGCKKVCVLLLYLTIAATSFFAHCDARRSMHLSRGPVHARSSIIKHAQELKVTKRFDLASLLLQKETMDSSNAGPYVSSPFTLPPYDSLGPISLPD NAPPNCIYPPNTPQPPSTAIPTPTGSMPSSPPPPFAYLPPVFPISNPPPSPTGEVPGPPSFTPIPNPPEIVPGPPINIPGTPKGAVPSPPGIIPGPPGSV PSPTIYVPGPPEAVPGPPYYEPSPPSYTPSPPTFVPSPTGYVPSPRGFRPPVVYPPPTGPPSPRRSPYSALWCVAKPSVPDPIIQEAMNYACGSGADCDS IQPSGSCFEPNTLFAHASYAFNSYWQRTRVAGGSCSFGGTAILVTVDPSYDGCHFIYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79480			Carbohydrate-binding X8 domain...		Potri.010G173500 [exp]	0	1
AT1G79480			Carbohydrate-binding X8 domain...		Potri.006G008200 [exp]	1.00	0.9935
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256700 [exp]	4.00	0.9818
AT1G29380			Carbohydrate-binding X8 domain...		Potri.001G353400 [exp]	5.47	0.9597
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	6.00	0.9792
AT5G27690			Heavy metal transport/detoxifi...		Potri.010G024700 [exp]	6.16	0.9579
AT4G10810			unknown protein		Potri.014G007000 [exp]	6.63	0.9782
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	7.74	0.9775
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G012000 [exp]	8.12	0.9766
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	8.36	0.9722
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G209200 [exp]	9.16	0.9761

Compare expression of checked genes

Potri.010G173500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.