Plant FIBer expression Database

IMPDH.3 (Potri.010G173600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol IMPDH.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16350 661 / 0 Aldolase-type TIM barrel family protein (.1)
AT1G79470 632 / 0 Aldolase-type TIM barrel family protein (.1)
AT3G14150 42 / 0.0006 Aldolase-type TIM barrel family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G082800
[exp]
852 / 0 AT1G16350 717 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001763
[exp]
574 / 0 AT1G54310 653 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Lus10000276
[exp]
454 / 1e-157 AT1G16350 469 / 5e-164 Aldolase-type TIM barrel family protein (.1)
Lus10036443
[exp]
0 / 1 AT1G16350 113 / 1e-29 Aldolase-type TIM barrel family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00478 IMPDH IMP dehydrogenase / GMP reductase domain
Representative CDS sequence
>Potri.010G173600.1 pacid=42798762 polypeptide=Potri.010G173600.1.p locus=Potri.010G173600 ID=Potri.010G173600.1.v4.1 annot-version=v4.1
ATGGCTGCAGAATTCGAAGACGGTTCACCCGCCGAAAAGCTCTTCAACCAAGGCTACTCCTACACGTACGATGACGTTATTTTCCTCCCTCACTACATAG
ACTTCCCAACCGACGCCGTTAACCTCTCAACTAAACTTTCGCGCAACATCCCTCTCTCTATCCCATGTGTTTCCTCTCCCATGGACACTGTTACGGAGTC
CTACATGGCGGCAGCCATGGCAGCGGTCGGTGGAATTGGGATTATTCACTCTAATGCAACACCGTCCGAGCAAGCTGATATGATCAGATCCGTTAAGTCA
CGCCGAGTGCCTATTTTGTCGAGTCCAGTTTTTAAGACGCCTGATTCACGGATTGTTAATGAGTTTGAAGGCGATGATGTTCCTTTTGTTTTTGTTACCC
AATCAGGGAATGAGAAGTCGAAGTTGCTGGGATATGTGGCGAAGTCTGATTGGTTGGGGTTGAAAGATACAGAAATTAAATTGGGAGAGATTATGCGCAC
GGATGCAAACGTGTCTGTGCCATGTCATTATGATTTGGGCCAGATTAATGGGAAGTTAAAAGAGGAAGGACGCGATTTTGTGGTGCTGGAGAAGGAGGGA
GGAGAGGTGGTGGATGTGGTGACGAAGGAGGAGGTTGAGAGGGTGAAGGGATATCCTAAGTTAGGGAAGGGAACTGTGGGCTCCGATGGGAGGTGGATGG
TTGGGGCGGCAATTGGAACGAGGGGGTCGGATAAGGAGAGGTTGGAGCATTTGGTGAAGGCAGGTGTTGATGTTATTGTGTTGGATAGTTCACAAGGGAA
TTCTATTTATCAGATCGAGATGATCAAATACGTGAAGCAGACTTATCCTGAGTTGGATGTGATTGGCGGGAACGTGGTGACAATGAGTCAAGCACAGAAT
TTGATTAAGGCAGGTGTGGATGGGTTGAGAGTTGGTATGGGGTCTGGATCTATATGCACCACACAAGAGGTTTGTGCAGTTGGGCGAGGACAGGCAACTG
CTGTTTACAAGGTTTCATCCATTGCCACACAAAGTGGCATTCCTGTCATTGCAGATGGTGGCATTTCATTCTCAGGTCATATTGTCAAAGCCCTGGTGCT
TGGGGCATCTACTGTAATGATGGGAAGCTTTTTAGCTGGAAGTACTGAAGCTCCTGGGGCTTATGAGCTTAATGAGAAAGGTTTACAGGTGAAAAAATAC
CGTGGCATGGGCTCCCTTGAAGCAATGACTAAAGGGAGTGATCAAAGATACTTGGGTGATACTGCTAAGCTAAAGATTGCTCAGGGAGTCGTGGGAGCAG
TTGCTGATAAAGGTTCTGTTTTGAAGCATGTACCTTACACCATGCAAGCAGTCAAGCAAGGATTCCAGGATCTTGGCGCATCCTCTTTGCGGTCTGCTCA
TGATTTATTAAGGTCAAAGACACTTAGGCTTGAGGTTCGTACAGCAGCAGCACAAGTTGAGGGTGGAGTTCATGGACTGGCTTCACATGAGAAGAAAGCC
TTTTGA
AA sequence
>Potri.010G173600.1 pacid=42798762 polypeptide=Potri.010G173600.1.p locus=Potri.010G173600 ID=Potri.010G173600.1.v4.1 annot-version=v4.1
MAAEFEDGSPAEKLFNQGYSYTYDDVIFLPHYIDFPTDAVNLSTKLSRNIPLSIPCVSSPMDTVTESYMAAAMAAVGGIGIIHSNATPSEQADMIRSVKS
RRVPILSSPVFKTPDSRIVNEFEGDDVPFVFVTQSGNEKSKLLGYVAKSDWLGLKDTEIKLGEIMRTDANVSVPCHYDLGQINGKLKEEGRDFVVLEKEG
GEVVDVVTKEEVERVKGYPKLGKGTVGSDGRWMVGAAIGTRGSDKERLEHLVKAGVDVIVLDSSQGNSIYQIEMIKYVKQTYPELDVIGGNVVTMSQAQN
LIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIATQSGIPVIADGGISFSGHIVKALVLGASTVMMGSFLAGSTEAPGAYELNEKGLQVKKY
RGMGSLEAMTKGSDQRYLGDTAKLKIAQGVVGAVADKGSVLKHVPYTMQAVKQGFQDLGASSLRSAHDLLRSKTLRLEVRTAAAQVEGGVHGLASHEKKA
F

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16350 Aldolase-type TIM barrel famil... Potri.010G173600
[exp]
0 1 IMPDH.3
AT3G42170 BED zinc finger ;hAT family di... Potri.004G126780
[exp]
3.00 0.8852
AT5G16860 Tetratricopeptide repeat (TPR)... Potri.012G041200
[exp]
4.47 0.8766
AT3G27550 RNA-binding CRS1 / YhbY (CRM) ... Potri.001G343700
[exp]
12.48 0.8554
AT5G15270 RNA-binding KH domain-containi... Potri.017G114400
[exp]
14.69 0.8487
AT3G18020 Pentatricopeptide repeat (PPR)... Potri.015G039300
[exp]
16.06 0.8708
AT5G62370 Tetratricopeptide repeat (TPR)... Potri.004G200900
[exp]
16.37 0.8672
AT2G33680 Tetratricopeptide repeat (TPR)... Potri.013G006800
[exp]
16.97 0.8536
AT1G55040 zinc finger (Ran-binding) fami... Potri.013G022300
[exp]
17.32 0.8654
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.001G138900
[exp]
20.17 0.8556
AT2G38770 EMB2765 EMBRYO DEFECTIVE 2765, P-loop ... Potri.003G201200
[exp]
20.78 0.8652

Potri.010G173600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.