Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79360 447 / 6e-153 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 445 / 4e-152 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G16370 370 / 3e-123 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G79410 335 / 3e-109 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G73220 295 / 1e-93 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT3G20660 202 / 1e-58 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G08930 68 / 6e-12 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05155 62 / 3e-10 Major facilitator superfamily protein (.1) AT3G05400 57 / 2e-08 Major facilitator superfamily protein (.1.2) AT1G20840 56 / 4e-08 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174400 [exp] 482 / 9e-167 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.016G039000 [exp] 404 / 6e-136 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.015G029400 [exp] 284 / 3e-89 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.012G037400 [exp] 273 / 5e-85 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.011G130533 [exp] 196 / 3e-56 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.018G151700 [exp] 72 / 5e-13 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.013G027700 [exp] 67 / 9e-12 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.014G000800 [exp] 65 / 6e-11 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 61 / 1e-09 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000286 [exp] 241 / 7e-76 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10013330 [exp] 207 / 3e-60 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10014801 [exp] 204 / 3e-59 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10027577 [exp] 69 / 4e-12 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 68 / 5e-12 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 68 / 1e-11 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 62 / 6e-10 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10028118 [exp] 60 / 4e-09 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 60 / 4e-09 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10018992 [exp] 57 / 3e-08 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.010G174300.2 pacid=42798487 polypeptide=Potri.010G174300.2.p locus=Potri.010G174300 ID=Potri.010G174300.2.v4.1 annot-version=v4.1 ATGGCAACTTCAGCTCCACTTATCTCAAAATCCCAGTTATCGTCCGGCATAGAAACCTTGGATCATCAGGAGCAACACTCGCTAGATGACACCATCGAAA AATACATAGAAGGTTTTGGACCGGCACAATATCTGCAAGTCATCCTTGTGTCATTGGCATTTCTGTTCGATGGACAGCAAACCTTCATTAGTGACTTTTC TGATGCTGTACCCTCATGGCACTGCACTGATTTTAGTAATCAAACTTGTTACTCGAGCTCCAATTTTTGCAATCTCTCAAACACTGAATGGGCCTGGGAT GAGCCAGCCAGCTCATCGATAGTTTCCGATTGGGCCCTTGAATGTGGCAGTTCAGTCATCGTCGGCTTACCGGCTTCAAGTTACTTTGTGGGCTCCCTGA TTGGTGGATTTACTCTTGCTACGCTTGCTGATTCCTGGCTTGGTAGAAAGAAGTTGCTCTTCCTAACTTGTCTGGGTATGTCCACAATGGCACTTATCAC TGCCTTCTCCACCAATGTGTGGATGTATTCAGGTTTGAGATTTGTTAGTGGACTTTTTCGCGCATCAATTGGAACGTGTGTTGTTGTGATGTCAACAGAA ATGGCAGGGAAGAAATCGGGTGGATTTGTAAGGGTGGTGGGCTTCTTGTTTTTTGCTCTAGGAGCACTCTCACTGCCCCTTATAGCTTACTTGAATAGAG GTTCTCCATGGAGATATCTTTACATTTATACCTCTATTCCAGCCATCGTTTACTGTATAATAGCTTATTTCTTTGTTAGTGAGTCTCCAAGATGGCTTTG CATGCGGGGACGTGAAGCTGAAGCAGTTGCAATTCTGAATAAAATGGTTCCAACAAAAAATATTAGTAGCTCTATTCTAAAATCTGCCTACAAGCCCCTC GACCATGAGCAGTCGAATCTTGACATATATTCATCGATGAAGAGCTTGCTGGAGAGGAGATGGGCTTTGAAAAGGTTGTTGGCTGCAATGACTCTTGGTT TTGGTGTGGGAATGGTATACTATGGCATGTTCTTGGGGGTTGGAAGCTTGGGTTTCAACATCTACCTTAGCGTGACACTTACTGCATCCTTGACCATACC TTCTATTCTTTTGCTCCCTTATGTAATAGAAAGATTTAATAGGAGAAGTTCAGTTGTGGCCTTTGGTATAGCAAGTGGGGTATGTAGCATTGTCTGTGCA ATAATTGGTGAAGAACTAAAGACTGTCCAGATTATCATGTCTTTAGCATCTGCTTTCTGCTCGTGTGCTGCACTTAACGTCCTGCAAATATACACTACAG AGTTGTTCCCTACTTGTGTAAGGATTTCAGCCACATCAATGTTTAGGCAAGCTATAAACTTCGGTCCCATATTTGTTCCACTGTTAGTTTCAGCTGCCAG GAGAAATAATTCTGTAGTTTATGGAGTCTTTGGATCAGTAGAAATATCCTGTATCTTCTTTGTAATCTTCTTGCCAGAGACCAGGGGTTTGTCACTTTCC AACGCCATGGATGAACAAGAGAAGAAGGATAATGCAAACGCGTATGTAAGCTGA
AA sequence Show only first row Show all	>Potri.010G174300.2 pacid=42798487 polypeptide=Potri.010G174300.2.p locus=Potri.010G174300 ID=Potri.010G174300.2.v4.1 annot-version=v4.1 MATSAPLISKSQLSSGIETLDHQEQHSLDDTIEKYIEGFGPAQYLQVILVSLAFLFDGQQTFISDFSDAVPSWHCTDFSNQTCYSSSNFCNLSNTEWAWD EPASSSIVSDWALECGSSVIVGLPASSYFVGSLIGGFTLATLADSWLGRKKLLFLTCLGMSTMALITAFSTNVWMYSGLRFVSGLFRASIGTCVVVMSTE MAGKKSGGFVRVVGFLFFALGALSLPLIAYLNRGSPWRYLYIYTSIPAIVYCIIAYFFVSESPRWLCMRGREAEAVAILNKMVPTKNISSSILKSAYKPL DHEQSNLDIYSSMKSLLERRWALKRLLAAMTLGFGVGMVYYGMFLGVGSLGFNIYLSVTLTASLTIPSILLLPYVIERFNRRSSVVAFGIASGVCSIVCA IIGEELKTVQIIMSLASAFCSCAALNVLQIYTTELFPTCVRISATSMFRQAINFGPIFVPLLVSAARRNNSVVYGVFGSVEISCIFFVIFLPETRGLSLS NAMDEQEKKDNANAYVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79360		2-Oct, ATOCT2	ORGANIC CATION TRANSPORTER 2, ...		Potri.010G174300 [exp]	0	1
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.001G321900 [exp]	4.35	0.9580	A6.1
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Potri.014G029300 [exp]	6.40	0.8826
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.017G060300 [exp]	9.59	0.8757
					Potri.006G195500 [exp]	10.00	0.9328
					Potri.003G098500 [exp]	14.24	0.9152
					Potri.019G014330 [exp]	14.42	0.9257
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028100 [exp]	16.37	0.8557
					Potri.008G069050 [exp]	17.32	0.9185
					Potri.009G097750 [exp]	18.76	0.9086
					Potri.001G006250 [exp]	18.76	0.8330

Compare expression of checked genes

Potri.010G174300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.