Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16390 627 / 0 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79360 599 / 0 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G79410 396 / 3e-133 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16370 391 / 2e-131 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G73220 327 / 8e-106 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT3G20660 256 / 9e-79 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT3G13050 71 / 9e-13 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT1G30220 53 / 3e-07 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G04750 53 / 4e-07 Major facilitator superfamily protein (.1) AT1G67300 51 / 1e-06 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039000 [exp] 481 / 3e-166 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 481 / 3e-166 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.015G029400 [exp] 308 / 2e-98 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.012G037400 [exp] 305 / 2e-97 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.011G130533 [exp] 249 / 2e-76 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.018G150700 [exp] 86 / 1e-17 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.005G037000 [exp] 79 / 3e-15 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.018G151700 [exp] 77 / 1e-14 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 74 / 8e-14 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000286 [exp] 326 / 7e-109 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10014801 [exp] 246 / 6e-75 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 233 / 6e-70 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10033336 [exp] 75 / 4e-14 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10005825 [exp] 66 / 3e-13 AT1G16390 65 / 4e-14 organic cation/carnitine transporter 3 (.1) Lus10033337 [exp] 69 / 5e-12 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 64 / 1e-10 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 63 / 3e-10 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 62 / 7e-10 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10005217 [exp] 60 / 3e-09 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.010G174400.1 pacid=42798791 polypeptide=Potri.010G174400.1.p locus=Potri.010G174400 ID=Potri.010G174400.1.v4.1 annot-version=v4.1 ATGGCAGATTCAACACCACTTCTTCTCTCTCGACCGGACCCTTCCAATGAGTCAAAACAACCTCCCTCCCTTGATGAAACCATTGAACGTTGTATTGGAG AGTTTGGGCTCGCCCAACTCCTCCAAGCCATCCTTGTGTCATTTGCATGGGTGTTTGATGCACAACAAACATTCATTAGTGTTTTCACTGATGCTGAGCC AAAATGGCACTGCACAAGTGATTCATGTACTTCAGTCTCCGACATTTGCCATCTTCCTCAAAATTCATGGGCTTGGGATAGCCCTAAGGACACATCAATC ATATCAGAATGGGGACTTGAGTGTGCTAGTTCAATAATCAAAGGCCTACCCGCATCTTCATTTTTCATGGGGTGCCTCATTGGAGGACTGATGCTAGCCA CGCTTGCTGATTCCTTGCTTGGTCGCAAGAATTTGCTGTTTCTATCATGCCTAATGATGTCTTTCTCTGGATTATTCACTGTCTTCTCCAACAACATATG GATCTACTCGGCCTTGAAATTCGTTAATGGTGTCGGCCGTGCAACAATTGGAACATGCGCCCTTGTGTTATCAACTGAGCTTGTAGGGAAACGTTGGCGA AGCCAGGTAGGAGTTATTGGTTTCTTTTGTTTCACGCTAGGGTTTTTAACATTACCCGCTTTTGCATATATGAATAGAGGTTCCTCTTGGAGAACTCTTT ATCTATGGACTTCAGTACCAACAATTTTCTACTCCATATTAGTTCATTTCTTAGTTCGAGAGTCTCCAAGATGGCTTTTTGTTCGCGGACGTAAAGAAGA AGCCGTGACTATACTGAAGAGTATTGCTACGGCTGGGAGTAGTGGCATACTCATGAGCTTCTCAAATTTGGAATTCGGGAAAGAGTCATGGAATGTTGAT ACTTATTCAGCAATCAAGATTCTCTTAAAGAAAAAGTGGGCTTGCAGAAGACTGTTGACAGTCATGGCAGTGGTATTCGGTATTGGAATGGTGTATTACG GCATGCCATTAGGCCTCGGAAATTTGTCATTCAATCTCTACTTGAGTGTCACATTTAATGCCTTGTCAGAGCTACCTGCCTCATTAGTGACATTCTTCCT CGTAGACAAACTAAACCGAAAGGATTCGCTGCTTGTTTTCACCACTCTAAGTGGGGTTTGTAGCATCCTTTCAGTTGTGATGGGCGAGACATCTGCAAAT CTACAAATGGGGCTGGAGCTGGTATCTTTTTTCTGCGCATGTACAGCATTCAACATTTCATTGATCCACACACTAGAGTTATTCCCTACATGTGTGAGGA ATTCGGCAATATCAATGGCTAGACAATCTCTTGTATTCGGGGGTATGTTCAGTCCGGTGCTGGTGGCGGTTGGAAGTAAGAACAGGTTTCTGTCATACGG GATATTTGGGATGGTAATAGGGATTTGTGGGTTGTTTGTGATATTCTTGCCGGAGACAAGGGGCAGGACAATTTGTGACACCATGGATGAGGAAGAGTAC AACAGTACAAACAATGATCTGCCTGTGTTGGGGTGA
AA sequence Show only first row Show all	>Potri.010G174400.1 pacid=42798791 polypeptide=Potri.010G174400.1.p locus=Potri.010G174400 ID=Potri.010G174400.1.v4.1 annot-version=v4.1 MADSTPLLLSRPDPSNESKQPPSLDETIERCIGEFGLAQLLQAILVSFAWVFDAQQTFISVFTDAEPKWHCTSDSCTSVSDICHLPQNSWAWDSPKDTSI ISEWGLECASSIIKGLPASSFFMGCLIGGLMLATLADSLLGRKNLLFLSCLMMSFSGLFTVFSNNIWIYSALKFVNGVGRATIGTCALVLSTELVGKRWR SQVGVIGFFCFTLGFLTLPAFAYMNRGSSWRTLYLWTSVPTIFYSILVHFLVRESPRWLFVRGRKEEAVTILKSIATAGSSGILMSFSNLEFGKESWNVD TYSAIKILLKKKWACRRLLTVMAVVFGIGMVYYGMPLGLGNLSFNLYLSVTFNALSELPASLVTFFLVDKLNRKDSLLVFTTLSGVCSILSVVMGETSAN LQMGLELVSFFCACTAFNISLIHTLELFPTCVRNSAISMARQSLVFGGMFSPVLVAVGSKNRFLSYGIFGMVIGICGLFVIFLPETRGRTICDTMDEEEY NSTNNDLPVLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.010G174400 [exp]	0	1
					Potri.003G152500 [exp]	1.00	0.9211
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.004G057100 [exp]	5.29	0.8759
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.008G115100 [exp]	7.34	0.8536
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Potri.002G141700 [exp]	10.19	0.8391
AT2G26110			Protein of unknown function (D...		Potri.001G008160 [exp]	14.07	0.8438
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	17.60	0.8605
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.011G120200 [exp]	18.49	0.8253
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.010G249600 [exp]	19.62	0.8554
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	21.90	0.8323
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167000 [exp]	23.02	0.7896	PtrAAP10

Compare expression of checked genes

Potri.010G174400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.