Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54330 290 / 3e-97 NAC ANAC020 NAC domain containing protein 20 (.1) AT1G65910 282 / 4e-90 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 269 / 6e-90 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 276 / 2e-89 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 273 / 3e-88 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G46590 221 / 3e-70 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 219 / 6e-70 NAC ANAC071 NAC domain containing protein 71 (.1) AT1G32510 206 / 1e-64 NAC ANAC011 NAC domain containing protein 11 (.1) AT3G10500 207 / 2e-62 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10480 204 / 6e-62 NAC ANAC050 NAC domain containing protein 50 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081500 [exp] 540 / 0 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 281 / 5e-89 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 279 / 2e-88 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.015G030200 [exp] 262 / 4e-87 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.012G038100 [exp] 254 / 4e-83 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.003G089800 [exp] 236 / 5e-75 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 231 / 4e-73 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.008G031800 [exp] 212 / 6e-64 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229700 [exp] 207 / 2e-63 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007377 [exp] 288 / 5e-92 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 288 / 8e-90 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10026373 [exp] 264 / 6e-87 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10042284 [exp] 264 / 6e-87 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10010959 [exp] 268 / 1e-84 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10030978 [exp] 219 / 6e-69 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 219 / 9e-69 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10037939 [exp] 204 / 2e-62 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10031721 [exp] 194 / 2e-59 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031142 [exp] 194 / 3e-59 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.010G174600.2 pacid=42797152 polypeptide=Potri.010G174600.2.p locus=Potri.010G174600 ID=Potri.010G174600.2.v4.1 annot-version=v4.1 ATGGCGCCCGTGAGCCTCCCTCCTGGATTTAGGTTCCATCCAACCGATGAAGAGCTTGTTGTTTACTATCTTGATAGAAAAATCAACGGCCGCACAATTG AGCTTGAAATTATCCCAGAGGTTGATCTCTATAAATGTGAGCCATGGGACTTACCAGATAAGTCGTTTTTACCAAGCAAAGATTTGGAGTGGTATTTCTT AAGCCCTAGGGATAAGAAGTACCCTAATGGTTCAAGAACCAACAGGGCAACAAAAGCTGGTTACTGGAAAGCCACAGGGAAAGATAGACCAGTGAACTCT CAAAAGCGGCCGGTTGGCATGAAGAAGACATTGGTGTACTATAGAGGTAGAGCTCCCCATGGCATTAGAACCAACTGGGTAATGCATGAGTATCGCTTGA TCGACTCATTGTGTGGCGCTGCACCATCAAGTTTAAAGGATTCCTACGCATTATGCCGTGTTTTCAAGAAAACAATACATATTCCGAAAAAGAAAGAAGA AAAAAATAACGGGAATGAAGAGAAGGATGCAGCGTGGGTCTCAGAAGAACAATTATTAGGGGATGACACAAGCGGTATTGAAAGTTCTAAAGGGAGAGAA GCTGAAGATGAAAACTTCTTCAACAATGATTATTGTAAATTTCCATCTGAAACATCTTCCTCGGATGTCACTCAAGGGACTCCAATTGAAACTGCAATAG CCGATGATTTACAAGCTCCGTTTCCCTCAGATGAAGCCAACAGTTCGGCTAGCCTTTATTCAATGGGCGTGGATTTCTCGTCAAATCTAATTCAGGATAT GCAGATGCCAAACTGCTCAAGCTTGCATTACCAGTTTCCGTTCCCACCTTTAGAACTTGAGGATTTCCCACAGATTAGTATCACCGAGAGTATGAAGCCA TCGAAGCCTGAAATAATCGACGACTACATGATGTACAAGGATTGCATGAACGGAACACTAGAAGAGATCTTCTCTTTATGTTCCTCTCAAGACAACTCCA ATACTGTACTCCCCATGCAAGACTAA
AA sequence Show only first row Show all	>Potri.010G174600.2 pacid=42797152 polypeptide=Potri.010G174600.2.p locus=Potri.010G174600 ID=Potri.010G174600.2.v4.1 annot-version=v4.1 MAPVSLPPGFRFHPTDEELVVYYLDRKINGRTIELEIIPEVDLYKCEPWDLPDKSFLPSKDLEWYFLSPRDKKYPNGSRTNRATKAGYWKATGKDRPVNS QKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIDSLCGAAPSSLKDSYALCRVFKKTIHIPKKKEEKNNGNEEKDAAWVSEEQLLGDDTSGIESSKGRE AEDENFFNNDYCKFPSETSSSDVTQGTPIETAIADDLQAPFPSDEANSSASLYSMGVDFSSNLIQDMQMPNCSSLHYQFPFPPLELEDFPQISITESMKP SKPEIIDDYMMYKDCMNGTLEEIFSLCSSQDNSNTVLPMQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.010G174600 [exp]	0	1
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.018G091600 [exp]	4.24	0.9054
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.008G081600 [exp]	8.00	0.9171
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041600 [exp]	8.36	0.9170	HNL.5
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.014G090700 [exp]	10.09	0.9157
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	16.88	0.9134
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.008G097900 [exp]	17.83	0.8523
AT4G01410			Late embryogenesis abundant (L...		Potri.014G106100 [exp]	18.00	0.8844
AT5G22810			GDSL-like Lipase/Acylhydrolase...		Potri.009G151000 [exp]	18.11	0.9135
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	18.97	0.9065	MYB101.1
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	20.14	0.9083

Compare expression of checked genes

Potri.010G174600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.