Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79380 535 / 0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G14420 461 / 2e-160 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G67800 455 / 1e-158 Copine (Calcium-dependent phospholipid-binding protein) family AT3G01650 453 / 5e-157 RGLG1 RING domain ligase1 (.1) AT5G63970 441 / 4e-154 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT5G61900 97 / 2e-21 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 97 / 4e-21 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT5G07300 96 / 4e-21 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G08860 84 / 4e-17 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G23110 47 / 2e-05 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081300 [exp] 642 / 0 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 471 / 3e-165 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.001G342200 [exp] 469 / 6e-164 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 468 / 2e-163 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 455 / 1e-158 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 448 / 3e-156 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 448 / 3e-156 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.007G103700 [exp] 439 / 3e-153 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.008G183600 [exp] 411 / 7e-141 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022294 [exp] 465 / 2e-162 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 447 / 2e-155 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10036879 [exp] 442 / 2e-152 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10006463 [exp] 429 / 4e-148 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 422 / 2e-145 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 418 / 2e-144 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 413 / 1e-142 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10020885 [exp] 409 / 2e-140 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Lus10033043 [exp] 392 / 2e-133 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10003654 [exp] 317 / 8e-105 AT3G01650 376 / 2e-127 RING domain ligase1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF07002 [poplar] [flax] Copine Copine CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.010G174800.10 pacid=42797979 polypeptide=Potri.010G174800.10.p locus=Potri.010G174800 ID=Potri.010G174800.10.v4.1 annot-version=v4.1 ATGGGTGGGGTATTTTCACACGCCAAGTCTAATCAGAGAGGTTATAGCCGTGGTAGGAGCAGCGGAAATAGTAACATAGTTACAAGAGGAATATCTTCAC CTTCGTCTTCGACCTCGTATCCGTATCCGCATCATCCTAGAATAATGTCCAAGGAGCCATCATCGTCACTGAGTAATACTGCTAGAGCCACTGGTAGTGA TACTAGCAGTCAAGCAAAGGGAACCAGTCAAGCAAAGGGTGGTTCCAAATTGGAGAAGAAGCAATCCATCAAGCAGAAATATAGTTTCATCCCTGATAAT TTTTCTTCCCTAGAACAGGTTACGACAGCCTTGAGGGAAGCTGGACTGGAATCATCGAATCTCGTTGTTGGAATTGATTTCACTAAAAGCAATGAATGGA CAGGCAAAGTCTCGTTCAATAATCGTAGCCTTCATGCCATCGGAGACACACCTAATCCATATGAGAAAGCCATCTCTATTATTGGAAAGACGATGGCTCC TTTTGATGAAGACAACTTAATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAGGTGTTTAGCTTTCACAGTGATCATTCACCTTGCCAT GGTTTTGAAGAAGTCTTGGCATGCTACAAAAAGATTGTTCCAAACTTGCGACTTTCAGGGCCGACTTCGTATGGACCGGTGATTGAGGCTGCAATTGACA TTGTGGAAAAAAGTGGAGGCCAATATCATGTATTGCTCATCATTGCAGATGGCCAGGTCACAAGAAGTGTGGATACAGGCGATGGAGAAATGAGTCCACA AGAAGAGCAAACAATCAAGGCAATTGTCGATGCAAGTTCATACCCACTTTCGATAATTCTTGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAAAGA TTTGATGACAAACTCCCAGCACGTGAATTTGACAATTTTCAGTTCGTTAATTTCACTGCAATTATGTCAAAAAATGCAACCATCTCCGAGAAAGAAACAG CTTTTGCTCTAGCCGCTCTGATGGAGATTCCCCTCCAGTATAAAGCAGCTGTTGAGTTTGGTATTATCGGACGTTCCATGGGACAAGCAAAGAAAATCGT ACCACGCCCTCCTCCAGTTCCTTATTCTCGTCGTCCAGTGCTAGATCGTGAACCAACCCATGTTTCTTCTCCGGTCTTGGATGAAAGAACCCAGGCCTGC CCTATTTGTCTGACTAATAGAAAGGACTTGGCCTTCGGCTGTGGGCACATGACTTGTAGAGACTGTGGATCTAGAGTATCCAGTTGCCCTATATGCCGCC GGCCAATCACCAGCCGTATCAGGCTGTTTGCTTAA
AA sequence Show only first row Show all	>Potri.010G174800.10 pacid=42797979 polypeptide=Potri.010G174800.10.p locus=Potri.010G174800 ID=Potri.010G174800.10.v4.1 annot-version=v4.1 MGGVFSHAKSNQRGYSRGRSSGNSNIVTRGISSPSSSTSYPYPHHPRIMSKEPSSSLSNTARATGSDTSSQAKGTSQAKGGSKLEKKQSIKQKYSFIPDN FSSLEQVTTALREAGLESSNLVVGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAISIIGKTMAPFDEDNLIPCFGFGDATTHDQEVFSFHSDHSPCH GFEEVLACYKKIVPNLRLSGPTSYGPVIEAAIDIVEKSGGQYHVLLIIADGQVTRSVDTGDGEMSPQEEQTIKAIVDASSYPLSIILVGVGDGPWEDMKR FDDKLPAREFDNFQFVNFTAIMSKNATISEKETAFALAALMEIPLQYKAAVEFGIIGRSMGQAKKIVPRPPPVPYSRRPVLDREPTHVSSPVLDERTQAC PICLTNRKDLAFGCGHMTCRDCGSRVSSCPICRRPITSRIRLFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79380			Ca(2)-dependent phospholipid-b...		Potri.010G174800 [exp]	0	1
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	7.61	0.8115
AT5G64880			unknown protein		Potri.005G083900 [exp]	11.13	0.8084
AT4G31980			unknown protein		Potri.018G029800 [exp]	13.85	0.7783
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	14.89	0.7982
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	15.29	0.7950
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	15.49	0.8108
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.017G101400 [exp]	18.33	0.7650
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	18.43	0.7942
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	18.76	0.7955
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	25.92	0.7961

Compare expression of checked genes

Potri.010G174800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.