Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79350 1959 / 0 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081200 [exp] 2323 / 0 AT1G79350 1971 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G262101 [exp] 42 / 0.0001 AT5G42740 71 / 6e-16 Sugar isomerase (SIS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001836 [exp] 1859 / 0 AT1G79350 1838 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10001760 [exp] 1526 / 0 AT1G79350 1480 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10001837 [exp] 160 / 1e-44 AT1G79350 145 / 2e-40 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0023 [poplar] [flax] P-loop_NTPase PF13871 [poplar] [flax] Helicase_C_4 C-terminal domain on Strawberry notch homologue CL0023 [poplar] [flax] P-loop_NTPase PF13872 [poplar] [flax] AAA_34 P-loop containing NTP hydrolase pore-1
Representative CDS sequence Show only first row Show all	>Potri.010G174900.1 pacid=42798295 polypeptide=Potri.010G174900.1.p locus=Potri.010G174900 ID=Potri.010G174900.1.v4.1 annot-version=v4.1 ATGACTCAGCCATCGGCACCACCGCCGCTGGCCTCACAACCATCACCACAACCTCACTCTGCAGGCGGCAGCGTCCAGGTCCGCTGCGCTGGATGCCGAA TGATCTTAACCGTCGGACCCGGAATCACGGAATTCGTCTGTCCTTCATGTAAGATGCCGCAAATGCTGCCGCCTGAGCTCATGAAAAAGGCGGTGGCTCC GCCGCCTCAAAACAATAACAATATGCTCCATAAAATTACGTCGCCTTCGCAACTGCAAACGCCTGCTCACGGTGTCGATCCGACCAAGATGCAACTGCCT TGTGCTAATTGCAAGGCTATTTTGAATGTTCCTCATGGTCTGGCTCGGTTTCAGTGCCCTCAGTGTTTTATCGATCTCGCTGTTGATTTGTCGAAGATTA AACAGCTCTTTCCTCCTCCTCCTGCTATTCCTCCTCCTTCGCGAGCGGTGCTTCCTCTTCCTCCTCTACCGCGACCAGTTCTTCCTCCTCCCCCCGAAGA AGTCAACGAGGTAGCCATTGAAGTGGAGAGAGAAGAAGATGAAGGTGGCACCGTGGGAGAAACTTTTACAGATTATAGACCTCCGAAACTATCTATTGGA CCACCTCATCCTGATCCTATTGTGGAGACTTCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCCACTTATGATCTAAAAATCAAGGATGATTTAGAAAGTT CAAAGGCTTTGTCATGCTTGCAGATTGAGACATTAGTCTATGCATGTCAGAGACACCTTCAACACCTTCCAAATGGTGCCAGGGCTGGATTCTTTGTTGG AGACGGAGCTGGTGTGGGTAAAGGTAGGACAATTGCGGGCTTGATATGGGAAAACTGGCACCATGCAAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCA GACTTGAAGTTCGATGCAAGAAGAGACCTGGATGATGTTGGGGCAGCACATGTTGAAGTACATGCTTTGAACAAGCTGCCCTATTCTAAGCTTGACTCGA AGTCTGTTGGGGTCCGAGAGGGTGTTGTATTTTTGACATACAGTAGCCTCATTGCATCTTCTGAAAAAGGTCGTTCTCGTCTGCAGCAGCTTGTGCAGTG GTGTGGATCAGGATTTGATGGTCTTCTAATATTTGATGAGTGCCACAAAGCAAAAAATTTGATACCTGAAGCTGGAAGTCAACCCACACGGACAGGTGAA GCAGTTCTTGATATTCAGGCCCGACTTCCTGGAGCACGTGTTATCTATTGCTCAGCGACCGGTGCATCTGAGCCCCGAAATATGGGTTATATGGTCAGGC TTGGTCTTTGGGGAGATGGAACATGTTTTGATGTTTTCCAGAAGTTTCTAGGTGTTCTTGAAAAAGGTGGTGTTGGAGCATTGGAACTTGTTGCCATGGA CATGAAAGCAAGGGGAATGTATGTATGTCGTACCCTTAGCTATAAAGGGGCGGAGTTTGAAATTGTTGAAGCGCCCTTAGAACCTGAGATGATGGACATG TACAAAAAAGCAGCAGAATTTTGGGCAGAGTTACGAGTGGAGTTGCTTTCAGCAAGCACCTTTCTCACCAATGACAAACCTAACTCTAGTCAATTGTGGA GAGTATATTGGTCAAGCCATCAGCGCTTCTTTAGACACATGTGCATGTCAGCTAAGGTGCCTGCTGCTGTAAGAATAGCTAAGCAAGCATTGACAGAAGA AAAGTGTGTTGTTATTGGCCTACAGAGTACCGGGGAGGCTCGAACTGAGGAAGCTGTTTCAAAATATGGTTCTGAACTTGATGATTTTATTTCTGGTCCT CGAGAGTTGCTGCTGAAATTTGTGGAAGAAAATTATCCTCTGCCTGAAAAACCAGAGCAACAAGGAGAGGAAGGTGTAAAGGAACTTCAACGGAAGAGGC ACTCTGCAACACCTGGTGTTTCATCGAAAGGGAGAGTCAGAAAAGCTGCAAGATGGAAGCCTGAGAGTGATGATGACTTTGATGAAGGGTTTGGAACTGA TTCTGGAGGTGAATCCAATGGATCTGATGATGAGTTTCAGATCTGCGAGATATGCAATTCAGAAGAGGGAAGGAAGAAATTGCTCCAATGTTCTTGTTGT GGACAACTGGTCCATCCTTCATGTTTAGTGCCACCTGTTACAGATGTAGTATCTGAAGACTGGTCATGTCATTCGTGCAAGGAAAAAACAGAAGAATTTC TTCAACAACAGCATGCCTATCTTGTTGAACTTACAAAGAGGTATGAAACAGCTTTGGAACGCAAATCAAAAATTTTGGAGATAATTCGATCCTTGGATCT TCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGAGGCCCTGATAAAATTTCTGAAATGACTGGGAGGAGAGGCATGCTTGTAAGGGCCACCAGT GGAAAAGGTGTAACTTATCAGCCACGAAACTCAAAGGATGTCAGCATGGAAATGGTCAACATGCATGAGAAGCAGCTTTTCATGGATGGTAAGAAATTGG TTGCTATCATTTCTGAAGCGGGATCAGCTGGTGTGTCTTTACAGGCAGACAGAAGAGCAAAAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCC TTGGAGTGCTGACCGAGCAATTCAACAGTTTGGAAGAACACACCGATCAAATCAAGCTTCTGCGCCCATGTATAGGCTATTATTTACTAATCTTGGTGGA GAACGCCGCTTTGCATCTATTGTCGCCAAGAGATTGGAATCTCTTGGGGCTTTAACACAGGGCGACCGCAGGGCAGGGCCTTCATTGAGTGCTTACAATT ATGATAGTGCGTATGGGAAAAAGGCTTTGACGGTGATGTATAGAGGGATTATGGAGCAGGATACTCTGCCAGTTGTGCCTCCTGGATGTTCATCTGAAAA GCCAGAGACAGTTCAAGATTTTATAATGAAGGCAAAAGCTGCTCTTGTGTCTGTTGGAATAGTTAGAGACTCTGTTCTTGGTAATGGGAAAGACTATGGA AAGTTGTCTGGACGTATAATTGATTCAGACATGCACGATGTTGGGCGTTTCCTCAATCGGATCTTAGGACTGCCACCTGATATTCAAAATAGGCTGTTTG ATTTGTTCGTCAGTATCCTAGATCTTCTTGTTCAGAATGCACGCATTGAAGGGAATCTTGATTCTGGGATTGTTGATATGAAAGCGAACATTATAGAATT ACAAGGAACTCCCAAGACTGTTCACATTGATCAAATGTCTGGGGCATCAACTGTTCTGTTTACTTTTACTCTGGACCGTGGAATCACATGGGAGTCTGCA AGTACCATGCTCGAGGAGAAGCAAAAGGATGGGCTCAGTTCTTTGAATGATGGATTCTATGAATCTAAGAGGGAGTGGTTAGGAAGACGTCACTTTATTT TAGCATTTGAAAGCTCTGCTTCTGGAATGTTTAAGATTGTCAGACCTGCTGTTGGGGAGTCGGTAAGGGAAATGCCTCTGGCAGAGTTGAAAAACAAATA TAGAAAATTGCTGTCGTTAGAGAAAGCTCGTAGTGGCTGGGAAGATGAATATGAAGTTTCATCTAAACAGTGCATGCATGGCCCCAACTGTAAGCTTGGA AACTTTTGTACAGTTGGCAGAAGACAGCAGGAAGTAAATGTTTTGGGTGGTCTTATTCTTCCTGTTTGGGGCACTATCGAGAAAGCCCTTTCTAAGCAGG CTCGTCAAAGCCAAAAGCGACTCCGTGTTGTGCGTTTAGAAACTACCACAGATAACAAGCGAATTGTTGGGCTCCTTGTCCCAAATGCGGCTGTGGAATC TGTACTTCAAGATTTAGCGTGGGTCCAAGATATTGATGATTGA
AA sequence Show only first row Show all	>Potri.010G174900.1 pacid=42798295 polypeptide=Potri.010G174900.1.p locus=Potri.010G174900 ID=Potri.010G174900.1.v4.1 annot-version=v4.1 MTQPSAPPPLASQPSPQPHSAGGSVQVRCAGCRMILTVGPGITEFVCPSCKMPQMLPPELMKKAVAPPPQNNNNMLHKITSPSQLQTPAHGVDPTKMQLP CANCKAILNVPHGLARFQCPQCFIDLAVDLSKIKQLFPPPPAIPPPSRAVLPLPPLPRPVLPPPPEEVNEVAIEVEREEDEGGTVGETFTDYRPPKLSIG PPHPDPIVETSSLSAVQPPEPTYDLKIKDDLESSKALSCLQIETLVYACQRHLQHLPNGARAGFFVGDGAGVGKGRTIAGLIWENWHHARRKALWISVGS DLKFDARRDLDDVGAAHVEVHALNKLPYSKLDSKSVGVREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGFDGLLIFDECHKAKNLIPEAGSQPTRTGE AVLDIQARLPGARVIYCSATGASEPRNMGYMVRLGLWGDGTCFDVFQKFLGVLEKGGVGALELVAMDMKARGMYVCRTLSYKGAEFEIVEAPLEPEMMDM YKKAAEFWAELRVELLSASTFLTNDKPNSSQLWRVYWSSHQRFFRHMCMSAKVPAAVRIAKQALTEEKCVVIGLQSTGEARTEEAVSKYGSELDDFISGP RELLLKFVEENYPLPEKPEQQGEEGVKELQRKRHSATPGVSSKGRVRKAARWKPESDDDFDEGFGTDSGGESNGSDDEFQICEICNSEEGRKKLLQCSCC GQLVHPSCLVPPVTDVVSEDWSCHSCKEKTEEFLQQQHAYLVELTKRYETALERKSKILEIIRSLDLPNNPLDDIIDQLGGPDKISEMTGRRGMLVRATS GKGVTYQPRNSKDVSMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAKNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPMYRLLFTNLGG ERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKKALTVMYRGIMEQDTLPVVPPGCSSEKPETVQDFIMKAKAALVSVGIVRDSVLGNGKDYG KLSGRIIDSDMHDVGRFLNRILGLPPDIQNRLFDLFVSILDLLVQNARIEGNLDSGIVDMKANIIELQGTPKTVHIDQMSGASTVLFTFTLDRGITWESA STMLEEKQKDGLSSLNDGFYESKREWLGRRHFILAFESSASGMFKIVRPAVGESVREMPLAELKNKYRKLLSLEKARSGWEDEYEVSSKQCMHGPNCKLG NFCTVGRRQQEVNVLGGLILPVWGTIEKALSKQARQSQKRLRVVRLETTTDNKRIVGLLVPNAAVESVLQDLAWVQDIDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	1.00	0.8383	XRN4.2
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	2.00	0.8182
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	3.46	0.8172
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	4.89	0.7805
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	5.29	0.7793
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.006G191400 [exp]	6.40	0.7208
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	7.07	0.7682
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	10.39	0.8048
AT5G15640			Mitochondrial substrate carrie...		Potri.004G117000 [exp]	12.96	0.7015
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	13.85	0.7564	Pt-UBP27.1

Compare expression of checked genes

Potri.010G174900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.