Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79340 497 / 2e-175 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79330 479 / 6e-169 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79320 430 / 7e-150 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79310 418 / 7e-145 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G16420 278 / 3e-90 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT5G04200 241 / 1e-76 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G02170 92 / 3e-20 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 90 / 2e-19 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 79 / 2e-16 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081100 [exp] 661 / 0 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1) Potri.006G026500 [exp] 173 / 1e-50 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.016G024500 [exp] 171 / 6e-50 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1) Potri.014G052500 [exp] 96 / 1e-21 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 94 / 4e-21 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 92 / 3e-20 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 89 / 5e-19 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 88 / 7e-19 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 82 / 8e-17 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001761 [exp] 541 / 0 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001835 [exp] 538 / 0 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10012106 [exp] 174 / 9e-51 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10010437 [exp] 142 / 6e-41 AT5G04200 204 / 2e-66 metacaspase 2f, metacaspase 9 (.1) Lus10042857 [exp] 92 / 2e-20 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 92 / 3e-20 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 91 / 5e-20 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10009321 [exp] 84 / 3e-17 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010436 [exp] 73 / 4e-16 AT5G04200 92 / 2e-24 metacaspase 2f, metacaspase 9 (.1) Lus10015843 [exp] 78 / 2e-15 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF00656 [poplar] [flax] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Potri.010G175000.1 pacid=42796827 polypeptide=Potri.010G175000.1.p locus=Potri.010G175000 ID=Potri.010G175000.1.v4.1 annot-version=v4.1 ATGACAAAGAAGGCATTGTTGATAGGCTGCAACTACCCAGGAACAAAAGCTGAGCTCAAAGGCTGCATAAATGATGTCAAGAGGATGTACCAGTGTCTTG TTGATCGTTATGGTTTTTCTGAAGATAACGTAACTATCTTGATAGACACGGATGATTCTTACACACAACCAACTGGGAGAAACGTGCGCCAGGCGCTGAA GGATCTGGTTCGCTCTGCCGAGCCTGGAGACATGTTGTTTGTCCACTATAGCGGACATGGGACAAGGTTGCCTGCTGAAACTGGAGAGGATGATGATACT GGTTACGATGAGTGCATTGTCCCTTGTGATATGAATCTTATCACCGATGATGATTTCAGAGATTTTGTGGATCAGATCCCACAAGGTTGTCGCATAACAG TTGTATCTGATTCATGCCATAGTGGTGGCCTCATTGATGAGACTAAAGAGCAGATAGGGGAGAGCACAAGGCGTCAAGAGGAGGAGGAGGAGGAGGAGAA AGAGAAGGAGGGGTCTTCTGGGTTTGGATTTAAAAGTTTCTTGAAACAGACCGTGAAAGATGCATTTGAATCTCGTGGAGTTCACATTCCTTCTGGATTG CACCCCATCCGGCATGTCAAGGAGGAAGATTTTGATGACAGAGCAGTTGAAGGAGACTATGGTGAGCGAGAGTACGTGAAAAGTAGATCTCTGCCTCTCT CAACTCTCATAGAAATACTCAAGCAAAAGACTGGTAAAGATGACATTGATGTTGGGAAGCTGAGGCCAGCCCTTTTTGATGTCTTTGGAGAAGATGCAAG CCCTAAGGTGAAGAAGTTCATGAAGGTTATCATGGATAAACTCCAACTTGGTGATGGGGAAAGTGGAGGTGGTGGACTCTTTGGAATGGTTGGGAATCTT GCCCAGGAATTTCTCAAACAAAAACTGGAGCAGAACGAGGGGTATGCACAGCCTGCCCTCGAGACTGAGGTGGGTAGCAAGCAAGAAGTTTATGCTGGAG CAACTAAGCGTGCACTACCAGATGGTGGGATTTTGATCAGTGGCTGCCAAACAGACCAAACTTCTGCCGATGCCAGTCCAGGAGGAAATTCAGCCGAAGC ATATGGAGCTCTTAGCAATGCCATCCAGACTATACTTGGGGAGGCGGATGGTGACATTTCTAACCAGGAGCTTGTTTTGAGGGCCAGGAAGATTCTGAAG AAGCAGGGTTTCACTCAGCGACCTGGCCTCTACTGCAGCGACCATCATGTTGAAGCTCCATTTGTGTGCTGA
AA sequence Show only first row Show all	>Potri.010G175000.1 pacid=42796827 polypeptide=Potri.010G175000.1.p locus=Potri.010G175000 ID=Potri.010G175000.1.v4.1 annot-version=v4.1 MTKKALLIGCNYPGTKAELKGCINDVKRMYQCLVDRYGFSEDNVTILIDTDDSYTQPTGRNVRQALKDLVRSAEPGDMLFVHYSGHGTRLPAETGEDDDT GYDECIVPCDMNLITDDDFRDFVDQIPQGCRITVVSDSCHSGGLIDETKEQIGESTRRQEEEEEEEKEKEGSSGFGFKSFLKQTVKDAFESRGVHIPSGL HPIRHVKEEDFDDRAVEGDYGEREYVKSRSLPLSTLIEILKQKTGKDDIDVGKLRPALFDVFGEDASPKVKKFMKVIMDKLQLGDGESGGGGLFGMVGNL AQEFLKQKLEQNEGYAQPALETEVGSKQEVYAGATKRALPDGGILISGCQTDQTSADASPGGNSAEAYGALSNAIQTILGEADGDISNQELVLRARKILK KQGFTQRPGLYCSDHHVEAPFVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Potri.010G175000 [exp]	0	1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.010G181900 [exp]	1.73	0.8985	ASNAP.3
AT1G12310			Calcium-binding EF-hand family...		Potri.001G117900 [exp]	8.94	0.8888
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.008G095000 [exp]	12.72	0.8876	Pt-GRF12.2
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.012G057300 [exp]	13.96	0.8714
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	21.54	0.8782
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Potri.006G050200 [exp]	22.97	0.8812	VLN2.1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	29.34	0.8631
AT3G44150			unknown protein		Potri.016G068000 [exp]	32.06	0.8827
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.016G133800 [exp]	33.39	0.8101
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Potri.002G095600 [exp]	33.46	0.8741	ANNAT1.1

Compare expression of checked genes

Potri.010G175000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.