Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30870 299 / 7e-100 Peroxidase superfamily protein (.1) AT5G06720 229 / 9e-73 ATPA2 peroxidase 2 (.1) AT2G22420 228 / 1e-72 Peroxidase superfamily protein (.1) AT5G06730 224 / 2e-70 Peroxidase superfamily protein (.1) AT4G08780 222 / 9e-70 Peroxidase superfamily protein (.1) AT5G64120 221 / 1e-69 Peroxidase superfamily protein (.1) AT3G50990 221 / 1e-69 Peroxidase superfamily protein (.1) AT5G66390 220 / 3e-69 Peroxidase superfamily protein (.1) AT4G08770 220 / 3e-69 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G11290 219 / 5e-69 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156100 [exp] 361 / 1e-123 AT1G30870 352 / 8e-120 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 240 / 3e-77 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 239 / 5e-77 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 239 / 5e-77 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 239 / 5e-77 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 239 / 5e-77 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 238 / 2e-76 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 231 / 2e-73 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 222 / 4e-70 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038393 [exp] 370 / 6e-128 AT1G30870 350 / 7e-120 Peroxidase superfamily protein (.1) Lus10001228 [exp] 362 / 1e-124 AT1G30870 357 / 8e-123 Peroxidase superfamily protein (.1) Lus10004163 [exp] 221 / 7e-70 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10010634 [exp] 221 / 1e-69 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10008168 [exp] 221 / 2e-69 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10029543 [exp] 216 / 7e-68 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10020994 [exp] 216 / 2e-67 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10031548 [exp] 215 / 2e-67 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 215 / 3e-67 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10018374 [exp] 214 / 4e-67 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.010G175100.1 pacid=42798902 polypeptide=Potri.010G175100.1.p locus=Potri.010G175100 ID=Potri.010G175100.1.v4.1 annot-version=v4.1 ATGAAGTGGTGGTTTTGCACCTTTCTCCTCCTTGTTCAGTTTGAGTTGTACATGGTGTCAGCCATATTGCCACAGAACCCTGTCAAAGATTTAGTTAAGC CTCTGGGAGCACCGTCGATCTTGTCTCCTCAAGATTTCCTGTCTCTTAGCTACTATCAAAAAACTTGTCCTGCTGCTGAAGAAATAATTCACCGAAAAAT GAAAGCTTGGTTTCTAAAGGATTACACCTTGGCAGCTAGCATCATTCGCTTGCACTTCCATGATTGCGCTATTAGGGGATGTGATGCTTCTATCTTGTTG AACCATCGAAATAGTGAAAGGAGAGCTTATGCTAGCAAGACACTGAGAGGTTTCCAAGTGATTGATGAAATTAAAGCAGAGCTTGAGAGGAAGTGTCCAA AAACTGTCTCATGCGCGGACATTCTCACAGCTGCGGCTAGAGATGCCACTCTTCTGCTTGGAGGTCCATTCTGGGAAGTCCCATTTGGGCGTAAAGATGG AAAAACTTCCATTGCCAAAGAGGCTGACCTTGTTCCTCAGGGCCGCGAAAATGTCACAGCTCTGATTGATTTCTTCCAGGAAAGAGGATTGAGCATTCTT GATTTGGTTGTTCTCTCAGGTTCACACACAATTGGAAGGAGCAGTTGCTATTCATTCATGCACAGACTCGCTAACTATAAGGGAACTGGCAGGCCTGATC CTACCCTTGACAGACAATACTTGAGGAACTTGACAGGAAGTTGCAAATGGAGTTCTAACTTGGTCAATCTAGATAGAACAACTCCAAAGACTTTTGACGT GGAGTACTACAACAACCTTGGCAAGAAAAAGGGGTTGTTGTCAACAGATCAAGAACTCTACTCGGATCCAAGAACTGCGCCATTCGTTTCAGCATTCACA GATCAGCAGCCTGACCTTTTCTTTAATCAGTTTGCAGCGTCAATGGTGAATCTTGGAAACATTCTTGTCTATACTGCTCCGAATGAAAGCGAAATCAGAC TGGACTGTAATTATGTTAATCCCGCACCTAGCAAAAAGGGCAATCCACCACGACGCGGTTAA
AA sequence Show only first row Show all	>Potri.010G175100.1 pacid=42798902 polypeptide=Potri.010G175100.1.p locus=Potri.010G175100 ID=Potri.010G175100.1.v4.1 annot-version=v4.1 MKWWFCTFLLLVQFELYMVSAILPQNPVKDLVKPLGAPSILSPQDFLSLSYYQKTCPAAEEIIHRKMKAWFLKDYTLAASIIRLHFHDCAIRGCDASILL NHRNSERRAYASKTLRGFQVIDEIKAELERKCPKTVSCADILTAAARDATLLLGGPFWEVPFGRKDGKTSIAKEADLVPQGRENVTALIDFFQERGLSIL DLVVLSGSHTIGRSSCYSFMHRLANYKGTGRPDPTLDRQYLRNLTGSCKWSSNLVNLDRTTPKTFDVEYYNNLGKKKGLLSTDQELYSDPRTAPFVSAFT DQQPDLFFNQFAASMVNLGNILVYTAPNESEIRLDCNYVNPAPSKKGNPPRRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	0	1
					Potri.009G020201 [exp]	3.00	0.9997
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075800 [exp]	4.12	0.9979
AT2G04100			MATE efflux family protein (.1...		Potri.017G120500 [exp]	5.19	0.9959
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	5.91	0.9934	Pt-LJPLP.1
					Potri.006G009300 [exp]	6.78	0.9968
AT5G05800			unknown protein		Potri.014G061450 [exp]	7.34	0.9997
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	8.12	0.9972
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	9.00	0.9996	GY4.2
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Potri.008G168900 [exp]	9.16	0.9973	Pt-RIC1.1
					Potri.019G021902 [exp]	9.48	0.9892

Compare expression of checked genes

Potri.010G175100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.