Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79270 418 / 3e-140 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13460 298 / 4e-92 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT3G17330 286 / 9e-90 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G55500 287 / 2e-89 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G13060 289 / 4e-89 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G48110 287 / 2e-88 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT5G61020 279 / 9e-87 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G09810 266 / 3e-82 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT3G03950 258 / 1e-79 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT5G58190 254 / 3e-77 ECT10 evolutionarily conserved C-terminal region 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080800 [exp] 961 / 0 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.003G008400 [exp] 343 / 3e-110 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.004G223800 [exp] 335 / 2e-107 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.010G152300 [exp] 328 / 1e-102 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.007G002800 [exp] 309 / 3e-96 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.008G100200 [exp] 308 / 3e-95 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.014G001000 [exp] 304 / 1e-94 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 302 / 4e-94 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.019G034300 [exp] 293 / 1e-91 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037364 [exp] 333 / 8e-107 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10037365 [exp] 317 / 1e-100 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10035790 [exp] 329 / 4e-100 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 311 / 1e-96 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10033335 [exp] 298 / 3e-92 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 296 / 5e-92 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10018343 [exp] 297 / 1e-91 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10002624 [exp] 289 / 1e-89 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 287 / 1e-87 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10027582 [exp] 279 / 1e-85 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G175500.11 pacid=42796808 polypeptide=Potri.010G175500.11.p locus=Potri.010G175500 ID=Potri.010G175500.11.v4.1 annot-version=v4.1 ATGGCTCAACAACAACAACAACAACAACAGTCTCCTCATAAACCAATAGAAGAAATGATGAGGAATCTTAAGGTTGATCCTTCTCTAGAACTCTCCGAAT CTAATACGGTCCCTTCAAAGGATGGGAGCCCATCAGATGCAACGTCGTGTATTTCTTCGGCAGGAGATGCAACTGGGAGTGTCAAAGAAGATGATGTGTT CGATCATGACTCCCTGACTACAGATCAGGCCTTGCCATATCCAGCTGAGAACTACTACTACGGATATTACTATCCAGGTTATGATGCTACTTTTGGAGGA GGGTCTAATGACCAAGTATACTACGTGGCTGGTGATGGAACAGAACTTCAATACCCTGTTATGCAAGCAGATAATGGGTCTTTGATGTACTTCATGCCAG GGATACACCATAATTACAGCTCTTACGGCACTTATGTGCCTGTAAGCATGATTGGCATTGATGGACAATTTGTTGCTCAATCACCATATTCACCAAGCTC CGTGTTCCAACCATCCATTCCTTCCCCTGGATATATTCCAACTCCTGTTCCCTATGGAGAGTCTTTACCACACCTATGGGACCCATCTGTTTTTGCTGGG CATGGAACATTAGGGAATTATGGCCACAGCGGAGTTCTGGAAACTCCTAGAACTAAACCTAACAGGTCTTCACCTAGTAACCCTCGTGGTCCTGTATCAA AAAAGGCACTGCCTTCTGACTTAAGCAAATCGTTAGAAACTAAGACTTCCCTTCCAGCACTGGATGTCTCATCTGGTCATGGCATGCGTAACCAGTTAAA ATTACCGGGCAAGGCTTCACAGCATGTCTCTCCATTCCAGTCAGATGTACTGGGCAAAGGGTATTTTCCATTTTCAAAGTTTCCATCTTATAATCCAGGG AAGGGTGCAGTGCTCTATCCAAATAACACTATTAAGGCAAATGCAAGGGGTTGGGGAAGCAATGAAAAGCTGAAAACAAGAAGCAAGACCAATGGCATCA ATGATGCATTGCTTAATGAGCAGAATCATGGTCCCAGGACAACCAATGCAAAAGGTTCTGTGGCATTTGGAGGTAATGCTGCTGAATCTTTGGCTCCTGG TGGGAACGGAAACAGTAACAGCATAACTTCAGTTATTAGCAGGGATCAATATAACCTTCCTGACTTTCCAACCAACTACGATCATGCATTTTTCTTTGTT ATCAAATCTTACAGTGAAGATGATATTCATAAAAGCATCAAGTACAATGTGTGGGCCAGTACTCCTAATGGAAATAAGAGGCTGAATAGTGCATATCTAG ATTCGCAACAGAAGATAGCACAGATAGGCTGCAGTTGCCCTGTGTTTCTTTTCTTTTCGGTAAATGCAAGTGGCCAGTTCTGTGGAGTTGCAGAAATGAC TGGTCGTGTTGATTTCAATAAAAACATGGATTTCTGGCAACAGGAGAAGTGGAATGGTTATTTCCCAGTCAAGTGGCATATCATTAAAGATATTCCAAAC CCGCAACTACGACATATAATACTTGAAAATAATGAGAACAAGCCGGTGACAAATAGCAGAGACACACAGGAGGTAAAATTTCCTCAAGGTATTGAAATTC TGAACATATTCAAGAACTATGTTTCAAAGACATCAATATTGGATGACTTCGATTTTTATGAAAGTCGCCAGAAGGTGATGCATGAGAGAAGACCAAGGTC ATTGATATCCCATTTTGATCACAAACAGCAGAAAACAAATGAATTGATCTCTGGTTTTCAGTCGATAGATATATCTGCTACAAAAAACAAGGTGGACACT CGGGTTGGAGACAACACAAAAGAATGA
AA sequence Show only first row Show all	>Potri.010G175500.11 pacid=42796808 polypeptide=Potri.010G175500.11.p locus=Potri.010G175500 ID=Potri.010G175500.11.v4.1 annot-version=v4.1 MAQQQQQQQQSPHKPIEEMMRNLKVDPSLELSESNTVPSKDGSPSDATSCISSAGDATGSVKEDDVFDHDSLTTDQALPYPAENYYYGYYYPGYDATFGG GSNDQVYYVAGDGTELQYPVMQADNGSLMYFMPGIHHNYSSYGTYVPVSMIGIDGQFVAQSPYSPSSVFQPSIPSPGYIPTPVPYGESLPHLWDPSVFAG HGTLGNYGHSGVLETPRTKPNRSSPSNPRGPVSKKALPSDLSKSLETKTSLPALDVSSGHGMRNQLKLPGKASQHVSPFQSDVLGKGYFPFSKFPSYNPG KGAVLYPNNTIKANARGWGSNEKLKTRSKTNGINDALLNEQNHGPRTTNAKGSVAFGGNAAESLAPGGNGNSNSITSVISRDQYNLPDFPTNYDHAFFFV IKSYSEDDIHKSIKYNVWASTPNGNKRLNSAYLDSQQKIAQIGCSCPVFLFFSVNASGQFCGVAEMTGRVDFNKNMDFWQQEKWNGYFPVKWHIIKDIPN PQLRHIILENNENKPVTNSRDTQEVKFPQGIEILNIFKNYVSKTSILDDFDFYESRQKVMHERRPRSLISHFDHKQQKTNELISGFQSIDISATKNKVDT RVGDNTKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	0	1
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	2.00	0.9043
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	3.00	0.8914	Pt-MSJ1.3
AT5G63120			P-loop containing nucleoside t...		Potri.015G083000 [exp]	3.16	0.8819
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	3.46	0.8991
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.001G271700 [exp]	6.00	0.8782	MPK3.1
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	6.32	0.8844
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.001G168700 [exp]	7.48	0.8493
AT3G61260			Remorin family protein (.1)		Potri.014G081300 [exp]	7.48	0.8693
AT2G01650		PUX2	plant UBX domain-containing pr...		Potri.008G133700 [exp]	10.48	0.8598
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	14.38	0.8058

Compare expression of checked genes

Potri.010G175500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.