Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02860 363 / 2e-126 Phenazine biosynthesis PhzC/PhzF protein (.1) AT1G03210 347 / 2e-120 Phenazine biosynthesis PhzC/PhzF protein (.1) AT4G02850 321 / 5e-110 phenazine biosynthesis PhzC/PhzF family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175700 [exp] 570 / 0 AT4G02860 366 / 9e-128 Phenazine biosynthesis PhzC/PhzF protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003725 [exp] 444 / 5e-159 AT4G02860 374 / 4e-131 Phenazine biosynthesis PhzC/PhzF protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0288 [poplar] [flax] DAP_epimerase PF02567 [poplar] [flax] PhzC-PhzF Phenazine biosynthesis-like protein
Representative CDS sequence Show only first row Show all	>Potri.010G175701.1 pacid=42798421 polypeptide=Potri.010G175701.1.p locus=Potri.010G175701 ID=Potri.010G175701.1.v4.1 annot-version=v4.1 ATGGGAAAGAATTTTGTGAAATACTTTGTGGTGGACGCATTCACTGACTCGGCTTTCAAGGGTAACCCAGCTGCTGTATGTTTTTTAGAATCTGAAAAGG ATGAAAAATGGCTACAAGATGTGGCGGCTGAGTTCAATATCTCCCAGACAGGTTACTTGACACCAATCACTAGTGATGTTGCTGTCACTTCCAATCCTAG GTTCCGTCTTAGATGGTTCACTCCTGTTGCCGAGGTTAATCTTTGTGGCCACGCAACATTAGCTGCTTCACACACACTATTTTCAAATGGCTTGGTCAGT TCTGACATTATTGAATTTGACACGCTATCTGGGATCCTAACTGCTAAGAAAGTTCCTGAAAGTATCAACCCTGAGAGTGTCTCAAATGGTGAAGCAAAAG AGAGCTTTCTCATTGAATTAGATTTCCCAGTTGTCCCAACGACGGAGTTCTCCATAGACACTGTGTCGATTTCTAAGGCACTGAATTCTGCTCCAATAAT TGATCTCAAGAAGACTACAACCTTCGGTGACCTCTTCGTTGTCTTGCCGTCTGGTAAAGATGTTGCAGAAATAAATCCAGAATTTGGCGAGATACTTAAA TGTCCTGGAAGGGGGGTAATTGTTTCTGGAGTTGCTCCACCAGAGTCTGGATTTGATTTTTATAGCCGTTTCTTCTGCCCAAAACTTGGGATTAATGAGG ATCCTGTTTGTGGGAGTGCACATTGTGCGTTAGCACCTTATTGGAGCAAGAAACTTGGAAAGTGTGATTTTATGGCATATCAGGCATCTCCTAGGAGTGG GATACTGGACATCCACTTAGATGAGCAGAACCAGAGAGTGTTGCTGCGGGGGAAAGCTGTTACTGTGATGGAAGGCTCTGTACTGGTTTAG
AA sequence Show only first row Show all	>Potri.010G175701.1 pacid=42798421 polypeptide=Potri.010G175701.1.p locus=Potri.010G175701 ID=Potri.010G175701.1.v4.1 annot-version=v4.1 MGKNFVKYFVVDAFTDSAFKGNPAAVCFLESEKDEKWLQDVAAEFNISQTGYLTPITSDVAVTSNPRFRLRWFTPVAEVNLCGHATLAASHTLFSNGLVS SDIIEFDTLSGILTAKKVPESINPESVSNGEAKESFLIELDFPVVPTTEFSIDTVSISKALNSAPIIDLKKTTTFGDLFVVLPSGKDVAEINPEFGEILK CPGRGVIVSGVAPPESGFDFYSRFFCPKLGINEDPVCGSAHCALAPYWSKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLRGKAVTVMEGSVLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	0	1
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175700 [exp]	1.00	0.9560
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.018G022900 [exp]	3.00	0.9046
AT5G05340			Peroxidase superfamily protein...		Potri.016G132900 [exp]	3.74	0.8792	Pt-PRX1.14
AT3G22060			Receptor-like protein kinase-r...		Potri.004G032000 [exp]	3.87	0.8952
AT5G57850			D-aminoacid aminotransferase-l...		Potri.018G039000 [exp]	4.35	0.8701
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	4.89	0.9012
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072300 [exp]	4.89	0.8938
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	7.14	0.8747	Pt-YUC.2
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	8.12	0.8522
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283500 [exp]	10.48	0.8306

Compare expression of checked genes

Potri.010G175701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.