Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06130 80 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 76 / 3e-15 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 73 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G23000 63 / 3e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 60 / 5e-10 Heavy metal transport/detoxification superfamily protein (.1) AT3G04900 55 / 7e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 56 / 8e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 51 / 3e-08 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT3G56240 50 / 8e-08 ATX1, CCH copper chaperone (.1) AT2G28660 52 / 1e-07 Chloroplast-targeted copper chaperone protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175801 [exp] 181 / 1e-57 ND / Potri.008G202800 [exp] 78 / 6e-16 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G128400 [exp] 74 / 8e-15 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 74 / 9e-15 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 59 / 5e-10 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G023800 [exp] 56 / 5e-10 AT1G66240 124 / 7e-39 homolog of anti-oxidant 1 (.1.2.3) Potri.001G326100 [exp] 59 / 7e-10 AT3G04900 66 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G126600 [exp] 58 / 1e-09 AT3G04900 70 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G236500 [exp] 54 / 2e-09 AT1G66240 129 / 1e-40 homolog of anti-oxidant 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032445 [exp] 71 / 1e-13 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10041228 [exp] 71 / 2e-13 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10029942 [exp] 65 / 2e-11 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 63 / 7e-11 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10028529 [exp] 59 / 6e-10 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10043444 [exp] 55 / 3e-09 AT1G66240 127 / 4e-39 homolog of anti-oxidant 1 (.1.2.3) Lus10009116 [exp] 57 / 1e-08 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10015174 [exp] 55 / 2e-08 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10031514 [exp] 55 / 3e-08 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10028859 [exp] 52 / 4e-08 AT1G66240 125 / 8e-38 homolog of anti-oxidant 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.010G175800.1 pacid=42799886 polypeptide=Potri.010G175800.1.p locus=Potri.010G175800 ID=Potri.010G175800.1.v4.1 annot-version=v4.1 ATGGAACGTGAGCCGTTTGCTCCTTCAGTTGCTCCTCAGACATGTGTCCTGAAAATGAATTTTGCATGTGGAAATTGCCACAAGAAGATCAGGAAACAAT TGCAGAAAACTCAAGGTGTGCACTCCATCCACATAGATGCGAATGAGGGGAAGGTGACAGTCTCAAGTACAGTAGACCCTCATGTACTTATAGAAGAGTT TGCAAAGATTGGGAAGAAAGCACATCTTCTATGGGAACCAAGACCTCTCTTGATGAACCAAAACAATGCTGATAACAGAGGTAAGAGAGTTCAAGATGCA CCTTTTATTGCTCAACAAAATGGAATCGATCTCGATCAGCTGGCTCAACTGCAAAAATTCGCTGAGAATAAAAGCTTGAAACTTTTGGAGCTAAACCAAA CCAACAACATAAAGATGACCTTCAGTGACAACGGTGTTATCAGTCATAGTGATCATGCCACAGACATCAATACAAACAATTTGCACGAGCTTAAAGGGAG TAATGGAGCTATGAATGGGCACAACCCACCACCTATGAATACATTTGGTCAAGGCCAATATGGTAATATCGGTGGTGCGAGCAGCAGCAGAGGTCCTGCT CCCTCTGGTAATGGTAGTGGTGGATGTGATCCCACAACGAAAAATGTACCTCCTTGTTGCCACGCTTTTGAGTTCAGCTGTGGCGGCAATAGATGGGGTG AGGAGAAGGCTCAAAGGCCTCTACTGCCACCCAACTGTGATCCTACTGGTCCCATGCCAACATACAACCATGGTCCTTACGGCGCAACACCACCAAATCA CTATGCTCCTCATGGATCGCAACCGGTGAATATCCTACACGCAGATGTAAACTGTGGTGGGGGTCATAAAACTTGCCGGGTGATGTGA
AA sequence Show only first row Show all	>Potri.010G175800.1 pacid=42799886 polypeptide=Potri.010G175800.1.p locus=Potri.010G175800 ID=Potri.010G175800.1.v4.1 annot-version=v4.1 MEREPFAPSVAPQTCVLKMNFACGNCHKKIRKQLQKTQGVHSIHIDANEGKVTVSSTVDPHVLIEEFAKIGKKAHLLWEPRPLLMNQNNADNRGKRVQDA PFIAQQNGIDLDQLAQLQKFAENKSLKLLELNQTNNIKMTFSDNGVISHSDHATDINTNNLHELKGSNGAMNGHNPPPMNTFGQGQYGNIGGASSSRGPA PSGNGSGGCDPTTKNVPPCCHAFEFSCGGNRWGEEKAQRPLLPPNCDPTGPMPTYNHGPYGATPPNHYAPHGSQPVNILHADVNCGGGHKTCRVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06130			Heavy metal transport/detoxifi...		Potri.010G175800 [exp]	0	1
					Potri.010G175801 [exp]	1.41	0.7086
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414200 [exp]	18.38	0.6920
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	28.98	0.6240
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	38.15	0.6296
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	39.39	0.6539
AT4G11220		RTNLB2, BTI2	Reticulan like protein B2, VIR...		Potri.013G160900 [exp]	42.42	0.6112
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.002G123700 [exp]	43.68	0.6429
AT3G22250			UDP-Glycosyltransferase superf...		Potri.016G019400 [exp]	46.58	0.6402
AT5G07610			F-box family protein (.1)		Potri.013G109900 [exp]	60.54	0.6332
AT5G04020			calmodulin binding (.1)		Potri.016G041100 [exp]	81.33	0.6060

Compare expression of checked genes

Potri.010G175800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.