Plant FIBer expression Database

Potri.010G175801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G175800
[exp]
160 / 3e-50 AT3G06130 81 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G175801.1 pacid=42798749 polypeptide=Potri.010G175801.1.p locus=Potri.010G175801 ID=Potri.010G175801.1.v4.1 annot-version=v4.1
ATGAGCCTTCTCCTCACCCCATCTATTGCCGCCACAGCTGAACTCAAAAGCGTGGCAACAAGGAGGTACATTTTTCGTTGTGGGATCACATCCACCACTA
CCATTACCAGAGGGAGCAGGACCTCTGCTGCTGCTCGCACCACCGATATTACCATATTGGCCTTGACCAAATGTATTCATATGTGGTGGGTTGTGCCCAT
TCATCGCTCCATTACTCCCTTTAAGCTCGTGCAAATTGTTTGTATTGATGTCTGTGGCATGATCACTATGACTGATAACACCGTTGTCACTGAAGGTCAT
CTTTATGTTGTTGGTTTGGTTTAG
AA sequence
>Potri.010G175801.1 pacid=42798749 polypeptide=Potri.010G175801.1.p locus=Potri.010G175801 ID=Potri.010G175801.1.v4.1 annot-version=v4.1
MSLLLTPSIAATAELKSVATRRYIFRCGITSTTTITRGSRTSAAARTTDITILALTKCIHMWWVVPIHRSITPFKLVQIVCIDVCGMITMTDNTVVTEGH
LYVVGLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G175801
[exp]
0 1
AT3G06130 Heavy metal transport/detoxifi... Potri.010G175800
[exp]
1.41 0.7086
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.016G088000
[exp]
18.24 0.6891
AT4G11140 AP2_ERF CRF1 cytokinin response factor 1 (.... Potri.003G136300
[exp]
41.83 0.6767 ERF88
AT3G51480 ATGLR3.6 glutamate receptor 3.6 (.1) Potri.005G102600
[exp]
47.94 0.6663
AT5G24910 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P... Potri.008G026300
[exp]
67.74 0.6172
AT1G07180 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL ... Potri.011G044600
[exp]
110.19 0.6264
AT1G60190 AtPUB19 plant U-box 19, ARM repeat sup... Potri.015G074200
[exp]
134.37 0.6052
AT1G80450 VQ motif-containing protein (.... Potri.006G266600
[exp]
172.97 0.6002

Potri.010G175801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.