Plant FIBer expression Database

PM41.1 (Potri.010G176200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PM41.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21820 116 / 4e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001842
[exp]
90 / 2e-23 AT3G12685 118 / 3e-32 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G176200.1 pacid=42798781 polypeptide=Potri.010G176200.1.p locus=Potri.010G176200 ID=Potri.010G176200.1.v4.1 annot-version=v4.1
ATGTCAGGGGCACAGGGAGCACAGCCGCCGGGCAGTACAACAGCAACAACATACGAGTCAGTGCCAGGGGGGGAGAACAAGACCAGAGTTAAGGTGGACT
CAAAGGAGGATCAGGGCGCGATCCAGGTCGACAAACTCCAGGAGAAGGTTCCTGACGCCGCTGGCGAAGGAGGCCCTGTCTTTGGCGCTGGCAAAGATGA
AAATAAGAAAGACTTGGGAGTTACTGGCACTGGCGAGTAG
AA sequence
>Potri.010G176200.1 pacid=42798781 polypeptide=Potri.010G176200.1.p locus=Potri.010G176200 ID=Potri.010G176200.1.v4.1 annot-version=v4.1
MSGAQGAQPPGSTTATTYESVPGGENKTRVKVDSKEDQGAIQVDKLQEKVPDAAGEGGPVFGAGKDENKKDLGVTGTGE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21820 unknown protein Potri.010G176200
[exp]
0 1 PM41.1
AT1G60420 DC1 domain-containing protein ... Potri.005G244700
[exp]
2.44 0.8191
AT5G52300 LTI65, RD29B RESPONSIVE TO DESSICATION 29B,... Potri.012G141300
[exp]
7.07 0.8109
AT2G36640 ATECP63 embryonic cell protein 63 (.1) Potri.015G060600
[exp]
8.66 0.7947 ATECP63.1
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Potri.016G046350
[exp]
11.61 0.7819
AT1G60420 DC1 domain-containing protein ... Potri.002G017200
[exp]
14.14 0.7881
AT1G07430 HAI2 highly ABA-induced PP2C gene 2... Potri.009G037300
[exp]
14.69 0.7685
AT5G50360 unknown protein Potri.012G094400
[exp]
14.83 0.7455
AT5G42740 Sugar isomerase (SIS) family p... Potri.008G118900
[exp]
17.83 0.5787
AT4G12680 unknown protein Potri.014G170800
[exp]
19.89 0.7777
AT5G50360 unknown protein Potri.015G091900
[exp]
20.17 0.7340

Potri.010G176200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.