Plant FIBer expression Database

Potri.010G176250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G176250.1 pacid=42797394 polypeptide=Potri.010G176250.1.p locus=Potri.010G176250 ID=Potri.010G176250.1.v4.1 annot-version=v4.1
ATGAAGATGACAGTGGTATGGCTTCGAGTAGCAGGGGAAGAGGGACATATATTAGGGTTAGGGGCAGGGGTGGTAGAGGTGAATGAAATTGACAGTGCTC
TAGTTTTGTATAGAAGGGGAAAAGGCAGACATGGCAGGGGAAGGGGCAGAGGAAAAGGAAGATCATATGAGATTAGCACGTCCGAAAATGCAAGCCTTGG
CGATTCACAAAAAGTTTGTCACAGAACAGCCTTGTTATTTTCAGCCCCCGAACTTCTGCATCTAGCTGTTAGCTCCCTCTCGGTATTCCTCGAGGTAATT
GCCACTTTTTTAGCTCTTTCACGCGGAGGAGGATCTGTAAATTCATAG
AA sequence
>Potri.010G176250.1 pacid=42797394 polypeptide=Potri.010G176250.1.p locus=Potri.010G176250 ID=Potri.010G176250.1.v4.1 annot-version=v4.1
MKMTVVWLRVAGEEGHILGLGAGVVEVNEIDSALVLYRRGKGRHGRGRGRGKGRSYEISTSENASLGDSQKVCHRTALLFSAPELLHLAVSSLSVFLEVI
ATFLALSRGGGSVNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G176250
[exp]
0 1
AT1G11360 Adenine nucleotide alpha hydro... Potri.019G119400
[exp]
1.41 0.8639
AT3G23920 BAM1, BMY7, TR-... BETA-AMYLASE 7, beta-amylase 1... Potri.008G174100
[exp]
2.44 0.8283
AT1G01650 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PE... Potri.014G085300
[exp]
14.49 0.7741
AT3G11670 DGD1 DIGALACTOSYL DIACYLGLYCEROL DE... Potri.006G203200
[exp]
16.85 0.8057
AT4G34000 bZIP AtABF3, ABF3, D... DC3 PROMOTER-BINDING FACTOR 5,... Potri.004G140600
[exp]
24.97 0.7620 ABF1.1
AT3G22750 Protein kinase superfamily pro... Potri.005G213200
[exp]
25.80 0.8136
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Potri.001G168200
[exp]
28.63 0.7984 Pt-RSH2.3
AT3G26040 HXXXD-type acyl-transferase fa... Potri.004G017600
[exp]
31.96 0.7743
AT5G41790 CIP1 COP1-interactive protein 1 (.1... Potri.003G137400
[exp]
37.30 0.7572
AT1G61110 NAC ANAC025 NAC domain containing protein ... Potri.004G038000
[exp]
37.52 0.7556 NAC005

Potri.010G176250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.