Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54350 911 / 0 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT4G39850 181 / 4e-47 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT3G28390 56 / 1e-07 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28415 56 / 1e-07 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28360 56 / 2e-07 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28380 55 / 2e-07 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT2G36910 54 / 4e-07 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G28010 54 / 5e-07 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G67940 52 / 6e-07 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT5G39040 53 / 7e-07 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092200 [exp] 185 / 2e-48 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.005G076200 [exp] 182 / 2e-47 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.018G141300 [exp] 62 / 9e-10 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G097200 [exp] 59 / 1e-08 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G085000 [exp] 58 / 3e-08 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 57 / 5e-08 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 56 / 1e-07 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059600 [exp] 56 / 1e-07 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 55 / 1e-07 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001758 [exp] 959 / 0 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10001839 [exp] 681 / 0 AT1G54350 670 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10041690 [exp] 181 / 3e-47 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10024056 [exp] 179 / 3e-46 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 70 / 4e-12 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10023929 [exp] 58 / 4e-08 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 57 / 4e-08 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10031069 [exp] 53 / 7e-08 AT1G67940 268 / 9e-92 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10021145 [exp] 56 / 1e-07 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10035834 [exp] 56 / 1e-07 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF05992 [poplar] [flax] SbmA_BacA SbmA/BacA-like family
Representative CDS sequence Show only first row Show all	>Potri.010G176400.2 pacid=42797594 polypeptide=Potri.010G176400.2.p locus=Potri.010G176400 ID=Potri.010G176400.2.v4.1 annot-version=v4.1 ATGACGGCGACGATACTAGTAGACTCAAAACCGTTCACACTCTTTATCACTCCCAAGAAACCATATTACTCCACTGCTAATAACTTCCATCTCCTTCAAT TTAGTAAACAAAATCATAATTATTCGTCCACGATGCCTCCTCTCAAAAGGAGAGTAAAAGGCTACTACTCTTCAAAAAATTGGAATTTCAAAAACAGCTT CAGATCTGCCGCTGCTTCTTCTGCCACTGAGTCGCCACAACTAGATAAGGGGAGTAATAATAATAATGGTGATGGACAAAGAAAGGTGCCTGGGCTTAAC ACGCTATTTAGAAGATTCTGGAAAGTGGCTGCACCTTATTGGTTCTCAGAGGACAAGGAGCCAGCTAGATTGCAATTGGCTGCTGTTTTTGCTCTCACTT TGGGTACCACTGGTATTAGTGTCGGTTTCAATTTCCTTGGTCGCGATTTCTACAATGCGCTTGCCAATAAGGATCAAGAACAGTTTACGAAGCAGTTATT GTACTACCTTGGAGCCTTCGCTGGAGGAATTCCGTTATTTGTATTGAGAGATTATGCAAGAGAGATACTTGGTTTGAGATGGAGGTCTTGGATGACTAAA TTTTACATGGAGCGTTATCTGAAAAATCAGACGTTTTACAAAATTCAATCCCAATCTATTATTGATAATCCGGATCAGCGCATTGTTGATGATCTAAGTT CATTCACGGGGACAGCCCTTTCCTTTTCGTTGACACTTTTCAATGCTGCTGTAGACTTGATATCGTTTAGTAACATCTTGTATGGCATCTATCCACCACT GTTTGTTGTTCTCCTTGCGTATTCTATTGGCGGAACAGCTATCAGTGTTTTTCTTGGAAGGGAATTAGTGACTCTAAATTTCTTGCAAGAAAAAAAAGAA GCAGATTTTCGTTATGGGCTTGTGCGTGTTCGTGAAAATGCTGAATCAATTGCTTTCTTTGGGGGTGAAGAAAATGAAATTCAACTTCTGCTGCAGCGGT TCAAAAGTGCTTTTGAAAATTTAACAAGGCTGTTGATATCTTCTAGAAATCTAGAGTTCTTCACAAGTGGCTACCGGTACCTAATCCAGATTCTTCCTGC TGCTGTTGTTGCTCCTATGTATTTCTCTGGAAAAATTGAGTTTGGTGTCATTAATCAGTCTGTATCTGCTTTTAATCATATCCTTGGAGATTTTTCCCTT ATCGTGTACCAATTTCAAGCCATCAGTGCCTTTTCAGCTGTCATTGACCGGTTAGGTGAATTTGATGATGTTCTGGATAGCAGCAGCTCTAAATGTATTT CCAGCTCCGTGGAAGAGATTTCTCTTACATACTGTGATGAGCGAAGTTCACTTTTATTGGAGTCTAATGGTTCCATACTAATGGACAGGTGCCAAAAAGT ATTGGATTTAGAGAATTTGACACTACAAACACCAACGAGTAAAGCTATACTGATCAGGGACTTGTCATTGGTTATTAACAAGAAAGATCATTTACTTGTA ACAGGACCTAGCGGGAGCGGTAAAACGTCTTTGTTGAGAGCTCTGGCTGGTCTCTGGAATACTGGACAAGGGAAAATCACTTTCTATGTTAATGAGGGAA ATGATCCTCAGGCACCCACTTCTTCAGAAGTACCTGCTCTTAAAGTAAATACTGCTGATGACACGGCTGAGGAACTTGAAGGACCCATTAACAGAAACGA CAGAGGCATATTTTTCCTTCCTCAAAGACCATATATGGTTTTGGGAACACTTCGTCAGCAATTGCTTTATCCTACATGGGCTGATGATGTAATTCCTACA TCAGATGGTGGCAATCCAGCTGGCTCATTGCCTTTCTTGATGCGGAATTCAAGCTCTGGAACCAGTGGTGGAAAGCGTAGTAAGCCCACTACAGATGATT TAATACAGGTTTTAGAGGATGTCCGGCTTGGCTACATATTATCACGTTTTGGTAGTCTGGATTCAACACATGAGTGGTCCAGTGTTCTGTCCCTTGGTGA GCAGCAGCGCCTTGCCTTTGCACGTCTGTTGCTTTCAAAACCAAAAGTGGTTCTATTGGATGAGTCTACTAGTGCTTTGGATGAAGCCAATGAGGAACAC CTGTACAGGCAGATTGAAGCAGCAGGTATGACATATATTAGCGTTGGCCATAGGCGAACTCTCTATGACCACCATAACAGGAACTTACATATAACCACGG TGGATCCCAGCAGCAACGAGCGAAATTGGCATGTTGAACCCATCAATCGTGATTCCTTGTATAACATTTTGAATCGTTAG
AA sequence Show only first row Show all	>Potri.010G176400.2 pacid=42797594 polypeptide=Potri.010G176400.2.p locus=Potri.010G176400 ID=Potri.010G176400.2.v4.1 annot-version=v4.1 MTATILVDSKPFTLFITPKKPYYSTANNFHLLQFSKQNHNYSSTMPPLKRRVKGYYSSKNWNFKNSFRSAAASSATESPQLDKGSNNNNGDGQRKVPGLN TLFRRFWKVAAPYWFSEDKEPARLQLAAVFALTLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPLFVLRDYAREILGLRWRSWMTK FYMERYLKNQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLAYSIGGTAISVFLGRELVTLNFLQEKKE ADFRYGLVRVRENAESIAFFGGEENEIQLLLQRFKSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSL IVYQFQAISAFSAVIDRLGEFDDVLDSSSSKCISSSVEEISLTYCDERSSLLLESNGSILMDRCQKVLDLENLTLQTPTSKAILIRDLSLVINKKDHLLV TGPSGSGKTSLLRALAGLWNTGQGKITFYVNEGNDPQAPTSSEVPALKVNTADDTAEELEGPINRNDRGIFFLPQRPYMVLGTLRQQLLYPTWADDVIPT SDGGNPAGSLPFLMRNSSSGTSGGKRSKPTTDDLIQVLEDVRLGYILSRFGSLDSTHEWSSVLSLGEQQRLAFARLLLSKPKVVLLDESTSALDEANEEH LYRQIEAAGMTYISVGHRRTLYDHHNRNLHITTVDPSSNERNWHVEPINRDSLYNILNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Potri.010G176400 [exp]	0	1
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	3.46	0.9713
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	4.00	0.9712
AT1G78915			Tetratricopeptide repeat (TPR)...		Potri.008G003800 [exp]	5.47	0.9624
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	7.34	0.9701	Pt-HCF101.1
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	8.24	0.9680
AT1G76570			Chlorophyll A-B binding family...		Potri.005G258600 [exp]	8.36	0.9636
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	8.48	0.9566	NADK2.2
AT1G73110			P-loop containing nucleoside t...		Potri.001G037300 [exp]	10.95	0.9504
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Potri.006G133900 [exp]	11.22	0.9517
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.002G000200 [exp]	11.40	0.9527

Compare expression of checked genes

Potri.010G176400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.